Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01802 ATGGGTTGGGTTCCTTCCTTCGATTTTTCCCGGTGGAAGCTGGTGGGACTTCTCCGACGAGGTGGAGGTTCAGGAGCTGGCTCAGCCGGTGACCGTGTGGCGCGCTTTGGCCAAAATGTGGGAACTTGTTGCTCGAGACAGATGGGTCATTTTCGCCGCATTCTCTGCTCTGATTCTCGCAGCAGTTTCGGAGATTTCCATACCACATTTCTTGACAGCATCCATCTTCTCGGCACAGGGTGCGGATATTGCAGTTTTTCATCGGAATGTGCGTTTGTTGGTTCTGTTGTGTGTAACTTCGGGAATATGCAGGTCAAAATCTTTGGGATACGAGGTTGCTGTTTTGGCATTGCAAATATGATTCTGGTTAAGAGAATGAGAGAAACATTATACTCTTCCCTTCTTCTTCAGGATATATCATTTTTTGACAATGAAACAGTAGGTGTTTTGACAAGTAGGCTTGGGGCAGATTGTCAACAAGTGTCAAGGGTTATTGGAAATGATCTTAACTTGATATTGCGCAACATTCTTCAGGGGGGAGGTTCATTAATTTACTTGTTGATTTTGTCTTGGCCACTTGGTTTATGTACATTGATGATATGCTCCCTATTAGCAGCAGTTATGTTACGTTATGGAAGGTACCAGAAAAGGGCAGCAAGGTTGATCCAAGAAGTCACTGCTTCTGCTAATGATGTAGCTCAAGAGACGTTGTCTCTTATTAGAACTGTCCGAGTTTATGGAACAGAAGAAGGAGAATTTGGAAGGTACAAATGGTGGCTGGGGAAATTAGCTGACATAAGCATGCGACAAAGTGCTGCATATGGGTTTTGGAATTTTAGCTTCAACACTCTCTATCATTCAGCTCAGGTTATCGCTGTGCTATTTGGAGGAATGTCTATTCTTGCGGGTCATATTACAGCAGAGAAACTTACTAAGTTTATACTCTACAGTGAATGGGTAATTTATTCAACCTGGTGGGTGGGGGACAATATATCCTCTTTGATGCAATCAGTTGGAGCTAGTGAAAAAGTATTCCACTTAATGGATCTGTCACCTAGCAGCCAATTCATAACAAGAGGAATAAAGTTGCAGAGGTTAACAGGACAAATTGAGTTTCTAAATGTATCTTTTCACTATCCTTCAAGACCAACGGTATCTGTAGTGCAACATGTAAACTTTTTTGTCAATCCTGGTGAGGTGGTTGCCATTGTTGGTCTTAGCGGTAGCGGAAAAAGCACATTGGTGAATCTTTTGCTTCGTCTCTATGAGCCTACAAATGGTCAGGTTTTGATAGATGGTATCCCTCTTAAAGACTTGGACATCATATGGTGGAGAGAGAGAATTGGATATGTGGGACAGGAACCCAAGCTATTCCGGATGGATATTAGTTCAAACATCAGATATGGATGTACCCGAGATGTAAAGCAAGAGGATGTTGAATGGGCTGCAAAGCAAGCATATGCCCATGACTTCATATCAGCACTTCCCAATGGTTATGAAACACTTGTTGATGATGATCTGTTAAGTGGGGGACAAAAGCAGCGAATTGCTATTGCTAGGGCCATTCTTAGGGACCCGAAAATATTGATCCTTGATGAAGCCACTAGTGCACTGGATGCTGAAAGTGAACATAATGTGAAGGGTGTTCTTCGATCTGTTAGAAGTGATTCTGCATCAAGGAGAAGTGTCATAGTCATCGCACACAGGCTTTCTACTATACAAGCAGCTGACAGGATTGTGGTGATGGATGGTGGTCAAGTTGTTGAGAATGGAAGTCACAGGGAACTTCTCTTAAAAGATGGTCTATATGCACGGTTGACTCGAAAACAGGCTGATGCCATGGCGTGA 1848 0.4302 MGWVPSFDFSRWKLVGLLRRGGGSGAGSAGDRVARFGQNVGTCCSRQMGHFRRILCSDSRSSFGDFHTTFLDSIHLLGTGCGYCSFSSECAFVGSVVCNFGNMQVKIFGIRGCCFGIANMILVKRMRETLYSSLLLQDISFFDNETVGVLTSRLGADCQQVSRVIGNDLNLILRNILQGGGSLIYLLILSWPLGLCTLMICSLLAAVMLRYGRYQKRAARLIQEVTASANDVAQETLSLIRTVRVYGTEEGEFGRYKWWLGKLADISMRQSAAYGFWNFSFNTLYHSAQVIAVLFGGMSILAGHITAEKLTKFILYSEWVIYSTWWVGDNISSLMQSVGASEKVFHLMDLSPSSQFITRGIKLQRLTGQIEFLNVSFHYPSRPTVSVVQHVNFFVNPGEVVAIVGLSGSGKSTLVNLLLRLYEPTNGQVLIDGIPLKDLDIIWWRERIGYVGQEPKLFRMDISSNIRYGCTRDVKQEDVEWAAKQAYAHDFISALPNGYETLVDDDLLSGGQKQRIAIARAILRDPKILILDEATSALDAESEHNVKGVLRSVRSDSASRRSVIVIAHRLSTIQAADRIVVMDGGQVVENGSHRELLLKDGLYARLTRKQADAMA. 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01802 615 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 110 336 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca9g01802 615 PANTHER ABC TRANSPORTER B FAMILY 93 607 IPR039421 -
Seca9g01802 615 ProSitePatterns ABC transporters family signature. 508 522 IPR017871 GO:0005524|GO:0016887
Seca9g01802 615 SUPERFAMILY ABC transporter transmembrane region 108 350 IPR036640 GO:0005524|GO:0016020
Seca9g01802 615 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 370 609 IPR003439 GO:0005524
Seca9g01802 615 Gene3D - 368 611 IPR027417 -
Seca9g01802 615 SMART AAA_5 397 592 IPR003593 GO:0016887
Seca9g01802 615 Gene3D ABC transporter type 1, transmembrane domain 111 367 IPR036640 GO:0005524|GO:0016020
Seca9g01802 615 Pfam ABC transporter 389 536 IPR003439 GO:0005524
Seca9g01802 615 CDD ABC_MTABC3_MDL1_MDL2 370 610 - -
Seca9g01802 615 FunFam Multidrug ABC transporter ATP-binding protein 362 614 - -
Seca9g01802 615 Pfam ABC transporter transmembrane region 102 319 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca9g01802 615 CDD ABC_6TM_TAP 109 344 - -
Seca9g01802 615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 610 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01802 Seca-Chr9 29322056 29329211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01802 125 613 Calmodulin-binding Proteins AT2G36910 34.739 5.84e-71 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01802 - - pcin:129311051 1001.5