Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01792 ATGGCTTCTCTTTCTCAACTTCTTTCTCTTATCCTCCCTCTGCTGGCAGCTTCATTGATACCAAGTGTGTTTTCCCTTGATGTTTCAATCAAAACAACATACTTGGAACCCTTTAAATGTTCACCAAAAATCAGGACATGCAATGCCTCACTCTACCATATAAGCAATGGTTACAAGATAAACGAAATAGCCTACTTTTACTCTGTTAATTCCTCCCAAATCAAACCCATAATGCGTGGCACCAAACAAGATTACCTCATAACAGTGCCTTGTTCTTGCAAAAACACCATTGACCTTAGCGGATATTTCTATGATATAAACTACACAGTGAAGACTAACGAAAATTTTGTGGATATTCAAAAGCTGATTTACAGTGGGCAAGCTTGGCCTGTTAAGGAAAATTTGGTCCCAGATGAGAATATAACAATACATATTCCTTGTGGGTGTTCAGAAAGTGACTCACAAATTGTTGTCACATATACAGTCCAGAGGAATGATACACTAACATTAATTGCTCATCTGCTAAATTCTACAGTTGATGGTATGGTGAATATGAACCAAGTTATGGCTCCCAACCCCACATTCATAGATATTGATTGGGTGTTATATGTTCCCAAGGAATTAAATCCACTTTCCAATGGAAAAGAAAAGAAACATGAGTTGGTGACAATTATTGGCATCTTAGTGGGTGTGACACTGCTTTTAATTATTACCTTGATCATTCTCATTCTCACAAGAAATAAAGCCTATGAAACTTGCAAAAATGATCCAAACGCTGTCTCTAAAAGATCAATTGCCAATAGAAGTACTGTTTCCTTAAAGAACCGTGAATTTCTTACAGAATGCATGGAAGATGGAACACAATTTGACTCAGAGAGGCCAGTAATTTATACCCTTGAGGAGATTGAACATGGTACAAATAACTTTGATGAAACTCGAAGAATTGGAGTTGGTGGATATGGGAGTGTGTATTTTGGAATGTTAGGGGACAAGGAGGTTGCTGTGAAGAAGATGAGGTCTAACAAATCCAAGGAATTCTATGCAGAACTCAAGGCCTTGTGTAAGATCCATCACATTAACATTGTGGAGTTGTTGGGATATGCCAGTGGAGATGACCATCTTTATTTGGTGTATGAATATGTTCCAAGTGGATCTCTAAGTGAACATCTTCATGATCCATTGCTGAAAGGTCACCAGCCTCTTTCTTGGTGTGCTAGGCTTCAAATTGCACTGGATGCAGCAAAAGGCATTGAATACATACATGATTACACCAAAGCACGATATGTGCACCGTGATATAAAGACTAGTAATATTCTTCTTGATGAGAAGCTCAGAGCAAAGGTAGCAGATTTTGGTCTTGCAAAACTAGTAGAACGAACCAATGATGAAGAATTCATAGCAACAAGGCTTGTTGGAACACCAGGCTACCTTCCGCCAGAGTAG 1443 0.386 MASLSQLLSLILPLLAASLIPSVFSLDVSIKTTYLEPFKCSPKIRTCNASLYHISNGYKINEIAYFYSVNSSQIKPIMRGTKQDYLITVPCSCKNTIDLSGYFYDINYTVKTNENFVDIQKLIYSGQAWPVKENLVPDENITIHIPCGCSESDSQIVVTYTVQRNDTLTLIAHLLNSTVDGMVNMNQVMAPNPTFIDIDWVLYVPKELNPLSNGKEKKHELVTIIGILVGVTLLLIITLIILILTRNKAYETCKNDPNAVSKRSIANRSTVSLKNREFLTECMEDGTQFDSERPVIYTLEEIEHGTNNFDETRRIGVGGYGSVYFGMLGDKEVAVKKMRSNKSKEFYAELKALCKIHHINIVELLGYASGDDHLYLVYEYVPSGSLSEHLHDPLLKGHQPLSWCARLQIALDAAKGIEYIHDYTKARYVHRDIKTSNILLDEKLRAKVADFGLAKLVERTNDEEFIATRLVGTPGYLPPE. 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01792 480 ProSiteProfiles LysM domain profile. 158 204 IPR018392 -
Seca9g01792 480 ProSitePatterns Protein kinases ATP-binding region signature. 315 337 IPR017441 GO:0005524
Seca9g01792 480 Gene3D LysM domain 151 212 IPR036779 -
Seca9g01792 480 FunFam Os07g0541700 protein 381 473 - -
Seca9g01792 480 SMART serkin_6 309 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g01792 480 Pfam Protein kinase domain 310 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g01792 480 FunFam Kinase family protein 285 380 - -
Seca9g01792 480 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 37 480 IPR044812 GO:0019199|GO:0045087
Seca9g01792 480 SUPERFAMILY LysM domain 158 205 IPR036779 -
Seca9g01792 480 ProSiteProfiles Protein kinase domain profile. 309 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g01792 480 Gene3D Transferase(Phosphotransferase) domain 1 381 480 - -
Seca9g01792 480 SUPERFAMILY Protein kinase-like (PK-like) 293 480 IPR011009 -
Seca9g01792 480 ProSitePatterns Serine/Threonine protein kinases active-site signature. 428 440 IPR008271 GO:0004672|GO:0006468
Seca9g01792 480 Gene3D Phosphorylase Kinase; domain 1 287 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01792 Seca-Chr9 29240634 29244640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01792 279 480 Receptor kinase-like Gene Family AT1G51940 58.911 3.56e-78 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Seca9g01792 Pkinase 6.8e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01792 - - gmx:100800907 702.59