Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01779 ATGGATGAAATGTACGGAGTGCCGTCGACGGCGGAGTACGCCGACAAGGCTCTGATGACACCGGAGAATCTGATCTTCCCGGCGGACTACCACAGCTTCCTCATGTCCTCATCCGCCGCCGGCCGGATTCCCATGTTCGGATCCGACGACCTCCTCTCAGCGGAACCCTCCTCCGCCGTCGCCACTCCCGCTGGAATTCAGCGGCAAGAGGACGACATGGCCTCAACCGTCATGAAAGCCAAAATCGCTTCGCATCCTCACTATCCTCGCCTCCTCCAAGCTTACATCGACTGTCAGAAGGTTGGGGCGCCTCCGGAAATCGCGCGTTTGTTGGAGGAAATCCGGCGAGAAAACGACCTGTGCAAGAGGGACGTTGTGTCTTCCACGTGCTTTGGAGCCGATCCCGAGCTCGACGAGTTCATGGTCCCCCCTTCCGAAACCTACTGCGACATGCTGGTGAAGTATAAATCAGACTTGGCTCGTCCTTTTGACGAAGCAACCACCTTCCTCAACAAGATCGAAATGCAGCTCAGCCATCTCTGCACCGGTGCTTCCGTTCCCACCCTTTCTGATGATGGGGGTGTATCTTCGGACGAAGATTTTAGTGCTGGAGATGGTGATGGGCAAGATGGACAATTAAAAGGAGAAGATCGTGAGCTCAAGGACAGGCTTTTACGCAAGTTTGGGAGTCACATTGGAACATTGAAATTGGAATTTTCGAAGAAGAAAAAGAAGGGTAAGCTTCCGAAGGAAGCAAGACAAACACTGCTTCAGTGGTGGAATGTTCACTACAAATGGCCTTACCCAACGGAAGCTGATAAGATTGAACTGGCTAAGTCAACAGGGCTAGACCAGAAGCAAATTAACAATTGGTTTATTAATCAAAGAAAACGTCATTGGAAACCATCTGAGAATATGCAGTTTTCTATGATGGAAAATCTGACCGGACGATTCCTTGCCGAAGAATGA 969 0.5088 MDEMYGVPSTAEYADKALMTPENLIFPADYHSFLMSSSAAGRIPMFGSDDLLSAEPSSAVATPAGIQRQEDDMASTVMKAKIASHPHYPRLLQAYIDCQKVGAPPEIARLLEEIRRENDLCKRDVVSSTCFGADPELDEFMVPPSETYCDMLVKYKSDLARPFDEATTFLNKIEMQLSHLCTGASVPTLSDDGGVSSDEDFSAGDGDGQDGQLKGEDRELKDRLLRKFGSHIGTLKLEFSKKKKKGKLPKEARQTLLQWWNVHYKWPYPTEADKIELAKSTGLDQKQINNWFINQRKRHWKPSENMQFSMMENLTGRFLAEE. 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01779 322 Pfam KNOX2 domain 131 181 IPR005541 GO:0003677|GO:0005634
Seca9g01779 322 Pfam KNOX1 domain 78 119 IPR005540 GO:0003677|GO:0005634
Seca9g01779 322 Pfam Homeobox KN domain 259 298 IPR008422 GO:0003677|GO:0006355
Seca9g01779 322 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 59 309 - -
Seca9g01779 322 ProSiteProfiles 'Homeobox' domain profile. 239 302 IPR001356 GO:0003677
Seca9g01779 322 SMART KNOX2_2 127 182 IPR005541 GO:0003677|GO:0005634
Seca9g01779 322 SMART HOX_1 241 306 IPR001356 GO:0003677
Seca9g01779 322 CDD homeodomain 251 303 IPR001356 GO:0003677
Seca9g01779 322 SMART KNOX1_2 76 120 IPR005540 GO:0003677|GO:0005634
Seca9g01779 322 Pfam ELK domain 219 240 IPR005539 GO:0003677
Seca9g01779 322 ProSiteProfiles ELK domain profile. 219 239 IPR005539 GO:0003677
Seca9g01779 322 Gene3D - 238 312 - -
Seca9g01779 322 SUPERFAMILY Homeodomain-like 240 311 IPR009057 -
Seca9g01779 322 ProSitePatterns 'Homeobox' domain signature. 277 300 IPR017970 GO:0000981|GO:0006355
Seca9g01779 322 SMART ELK_2 219 240 IPR005539 GO:0003677
Seca9g01779 322 MobiDBLite consensus disorder prediction 192 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01779 Seca-Chr9 29078228 29085722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01779 1 322 Homeobox Transcription Factor Family AT1G23380 66.366 1.50e-150 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Seca9g01779 KNOX2 5.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01779 - - gmx:100794719 503.056