Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01777 ATGGAACTTAGTAGTTCGGTTTTCTGGATACTGGGTTTGCTTCTTCTGGTGCTGATGGAAGTTTCTTCTGCTGCTCTTTCTCCTTCCGGCATAAACTATGAAGCAGTTGTAGCTCTTATGGCCATAAAGAATGACTTGATTGATCCTTACAATGTTCTGGAGAATTGGGATATTAATTCTGTTGATCCATGTAGCTGGAGGATGATTACTTGTTCTACAGATGGTTACGTTTCTGCATTGGGATTGCCTAGTCAGAACTTGTCTGGTACACTATCTCCTGGGATTGGAAATCTTACCAACTTACAATCTGTGTTGCTTCAGAATAATGCCATTTCTGGTCAGATTCCTGCTGCAATAGGAAAGCTGGAAAAGCTTCAGACACTTGATCTCTCCAATAATGCATTTAGTGGTGAGATACCCAGTTCTTTGGGAGGCCTCAAGGACCTGAATTACTTGCGGTTGAACAATAACAGCCTAACAGGATCCTGCCCTCAGTCTCTTAGCAATATTGAAGGCCTAACCCTTGTGGACCTCTCCTACAACAATCTGAGCGGTTCCTTGCCGAGAATATCAGCAAGAACATTAAAGATTGTGGGTAACCCATTAATTTGTGGTCCAAAAGCAAATAATTGTTCTACTGTTTTACCAGAGCCACTTTCCTTCCCACCAGATGCACTAAGAGCCCAATCAGACTCTGGTAAAAAAAACCATCATGTGGCGCTTGCTTTTGGTGCAAGTTTTGGTGCTGCTTTTGTCATTGTGATTATAGTTGGGTTTCTTGTTTGGTGGCGGTATAGACACAACCAGCAGATATTCTTTGATGTTAATGAGCATTACGACCCAGAGGTGCGCCTTGGTCATTTAAAAAGATATTCATTCAAGGAGCTTCGGGCTGCAACAGACCATTTCAACTCAAAGAACATTTTAGGAAGAGGTGGCTTTGGAATAGTTTACAAGGCATGCTTGAATGATGGGTCTGTCGTGGCTGTTAAAAGGTTAAAGGACTATAATGCAACTGGTGGCGAAATCCAATTTCAGACAGAAGTTGAGACGATAAGTTTGGCTGTCCACCGGAATCTTCTGAGGCTTCGGGGGTTTTGCAGTACTCAGAATGAAAGGCTCCTTGTTTATCCGTATATGCCTAATGGTAGTGTAGCCTCTAGATTAAAAGATCATATTAATGGTCGGCCGGCTTTAGATTGGACAAGGCGGAAGAGAATAGCTTTAGGTACAGCGAGAGGATTGGTTTATTTGCATGAACAATGTGACCCTAAAATTATTCACCGTGATGTCAAAGCAGCCAACATATTGCTAGATGAAGACTTTGAAGCAGTTGTTGGTGATTTTGGTTTAGCTAAGCTTCTGGATCATAGAGATTCCCATGTGACCACTGCTGTGCGTGGCACTGTTGGTCACATTGCTCCAGAGTACCTATCCACTGGCCAATCATCAGAAAAGACTGATGTGTTTGGGTTTGGAATCTTGCTGCTTGAGCTGATCACAGGTCATAAGGCTGTAGATTTTGGGCGAGCAGCAAACCAGAAAGGTGTCATGCTTGATTGGGTTAAGAAGCTCCACCAGGAAGGAAAATTAAATCAAATGGTAGATAAAGATCTAAAGGGCAACTTTGACCTAGTTGAATTGGAAGAAATGGTTCAAGTTGCACTCTTGTGTACACAATTTAATCCTTCACACCGTCCCAAGATGTCAGAAGTATTAAAGATGTTGGAAGGGGATGGCTTAGCTGAGAGATGGGAAGCCTCACAGAGGATTGAAACACCAAGGTTCCGGTCCTTTGAAAATCCCCCTCAAAGATATTCAGATTTAATAGAGGAATCATCACTCATAGTAGAAGCTATGGAGCTTTCTGGCCCTAGGTGA 1881 0.4264 MELSSSVFWILGLLLLVLMEVSSAALSPSGINYEAVVALMAIKNDLIDPYNVLENWDINSVDPCSWRMITCSTDGYVSALGLPSQNLSGTLSPGIGNLTNLQSVLLQNNAISGQIPAAIGKLEKLQTLDLSNNAFSGEIPSSLGGLKDLNYLRLNNNSLTGSCPQSLSNIEGLTLVDLSYNNLSGSLPRISARTLKIVGNPLICGPKANNCSTVLPEPLSFPPDALRAQSDSGKKNHHVALAFGASFGAAFVIVIIVGFLVWWRYRHNQQIFFDVNEHYDPEVRLGHLKRYSFKELRAATDHFNSKNILGRGGFGIVYKACLNDGSVVAVKRLKDYNATGGEIQFQTEVETISLAVHRNLLRLRGFCSTQNERLLVYPYMPNGSVASRLKDHINGRPALDWTRRKRIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGHKAVDFGRAANQKGVMLDWVKKLHQEGKLNQMVDKDLKGNFDLVELEEMVQVALLCTQFNPSHRPKMSEVLKMLEGDGLAERWEASQRIETPRFRSFENPPQRYSDLIEESSLIVEAMELSGPR. 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01777 626 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524
Seca9g01777 626 Gene3D Transferase(Phosphotransferase) domain 1 380 595 - -
Seca9g01777 626 Pfam Leucine rich repeat 99 159 IPR001611 GO:0005515
Seca9g01777 626 FunFam Putative LRR receptor-like serine/threonine-protein kinase 31 213 - -
Seca9g01777 626 Pfam Protein kinase domain 304 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g01777 626 Pfam Leucine rich repeat N-terminal domain 36 72 IPR013210 -
Seca9g01777 626 ProSiteProfiles Protein kinase domain profile. 303 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g01777 626 Gene3D Phosphorylase Kinase; domain 1 272 379 - -
Seca9g01777 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 426 438 IPR008271 GO:0004672|GO:0006468
Seca9g01777 626 FunFam Somatic embryogenesis receptor kinase 1 272 379 - -
Seca9g01777 626 FunFam Somatic embryogenesis receptor-like kinase 1 380 596 - -
Seca9g01777 626 SMART serkin_6 303 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g01777 626 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 587 - -
Seca9g01777 626 SUPERFAMILY Protein kinase-like (PK-like) 280 577 IPR011009 -
Seca9g01777 626 Gene3D Ribonuclease Inhibitor 34 213 IPR032675 -
Seca9g01777 626 SUPERFAMILY L domain-like 34 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01777 Seca-Chr9 29011610 29017030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01777 68 626 Receptor kinase-like Gene Family AT1G60800 77.680 0.0 844
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Seca9g01777 Pkinase 8.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01777 - - gmx:100806943 1162.52