Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01772 ATGTCAACACTGAACCATCTTTTTGATCTTCCAGAACAGATATGTTACGTACAATGTGGATTCTGTAACACCATTTTAATGGTGAGTGTCCCATGCAGCAGTTTGTCAATGGTGGTGACAGTTAGATGCGGCCACTGCACAAGCCTCCTCTCTGTTAATATGATGAAAGCTTCTTTTGTCCCTTTCCACCTTTTAGCATCTCTTAGTCATCTTGAGCCAAAAGAAAGTAGTCCAGAAGAAGATGCAAACAAGACTTTGAACAGTCATAGTGCATCCATGATGACCTATTCTGATTGTGAGGAAGAGGATGTAATTCCAATGAACAATGTTGTGAATAAACCCCCAGAGAAGAGACAGCGAACACCATCAGCATATAACCGCTTCATCAAAGAAGAGATTAAAAGGCTAAAGGCTGAAAACCCTGACATGGCTCACAAGGAAGCTTTCAGCACAGCTGCAAAAAATGTAAGGTCTAGTTTTTTAAACTGTTCATTATATGTAATGCTGAAAAATTTTGTCATTTTCAGTGGGCCAATTTCCCCCCAACTCAGTACAAAGGAGATGAAGATAACTGTAGCCAGACAGATCAACCTGTGGATCTGGACTCCCATGTGGACCCTCAAGATGCAGAGGTCAATGAAGAAGGTCAGGGTTTCCGTGGAAGAAAGGTCCCAAGGAATTCCATCTTGGAAAGGACACCATTTGAGTGAAGAAAGCTCAGCATACATGACATAG 735 0.4177 MSTLNHLFDLPEQICYVQCGFCNTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLSHLEPKESSPEEDANKTLNSHSASMMTYSDCEEEDVIPMNNVVNKPPEKRQRTPSAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKNVRSSFLNCSLYVMLKNFVIFSGPISPQLSTKEMKITVARQINLWIWTPMWTLKMQRSMKKVRVSVEERSQGIPSWKGHHLSEESSAYMT. 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01772 244 Gene3D High mobility group box domain 110 159 IPR036910 -
Seca9g01772 244 Pfam YABBY protein 11 155 IPR006780 GO:0007275
Seca9g01772 244 SUPERFAMILY HMG-box 109 153 IPR036910 -
Seca9g01772 244 PANTHER PROTEIN YABBY 6-RELATED 2 164 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01772 Seca-Chr9 28913124 28916394 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01772 2 155 C2C2-YABBY Transcription Factor Family AT1G23420 66.867 5.64e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Seca9g01772 YABBY 7e-59 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01772 K25796 - gmx:100804172 298.516