Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01760 ATGGCTAATAAAACTAATGGAACCTCATCGATTGGGAACTCTTCTTCTTCTTCTTCGTTCAATTCCTCTCTTTCGAAAAATTCAGACAAGCCTTCGGCTCTCTCGCCATTTTCTTTGACCGCCGATGACTCAGATTCTCCGGGAACTGCACCATCAAAGACTCCTCCACCGTCACAGTCACCGCCATCTCAGCCTGTATCATCACCGCCATCGCCGTCAGAGGCTAATTCTCCACCACCTTCCCCGCCTCCATCTTCGCCGCCGCCACAATCTTCACCACCACCTCCGCTACCGTCGCCTCCACCGCCGGATTCTTCACCGCCTCCATCAAGTCCACCACCACCAAAAGCTTCATCTCCTCCCCCGACTCCATCGACACCACCTCTGTCACCACCACCATCATCGCCACCACCAACACCACCATCACAATCGCCACCGTCACCACCACCTCCCAACGCTAACGATTCTCCCCCTCCATCACCATCACAACCTAATTCCCCTCCTCCTCCAACTCTTCCAACTCCAACCCTACCTTCCCCTGCTTCCCACGTTCCTCCCACTCTTCCGCCGCCGCCACCAACAACCGGTCCATTACCAAACCATCCTCCGCCGCAACAGTCACCACCTGTTCCCCCTGGCTCCCATACAAAACCAGGCACTTCCCCTTCTAAAAGCCACGCGCCATCCACGTCACCGCCCTCCGGTGATAACAATAACACAGGACAATACGTTGGTTTTGCACTTGCCGCGGTTTTCGTTCTTGCTTTTATTGCAGTGATTCTTTATATTATATTGAAGAGGAAGAACAAGCTAGGGAGTTTCTATAGCGTGCAACCCACTAGGAAATCTCAAATGAAAGGAGATGTGCATTACTATGTAGAGGAGCCTGGTTTTGGGAATGGTCCACAAGATGGGTTTTATAGTTTTCAACCTCCACATGCAGGTGCCGTGGTGCAGCATTTGAGAACTCCTTCGGACCCAGCTCAGGCTCAGCAAATGAATACGGGTCAGATGGTTTTTAGCTATGACAAGGTTGCGGAAATTACGAATGGGTTTGCTAGTGAAAATGTTATTGGAGAAGGAGGGTTTGGGTGTGTTTACAAGGCTTCTATGCCTGATGGTAGAGTGGGAGCGGTTAAGCTTCTTAAGGCTGGTAGTGGACAGGGAGAAAGGGAGTTTAGGGCTGAGGTGGAGATTATTAGCCGTGTCCATCATCGACATTTGGTATCCTTGATTGGTTATTGCATATCTGAGCAGCAAAGAGTGCTTATCTATGAATATGTTCCTAATGGGAATCTCAATCAGCACTTGCATGGAAGTGGAAGGCTAGTTTTGGATTGGCCCAAGAGGGTGAAGATAGCAATTGGTGCTGCAAGGGGGCTGGCATATCTGCATGAAGGCTGTAAGTATATCTTGCGTTTGTGCTATATTCTATTTCTTGTCACATATTTGAACTCAATGGGCAACCCAAAGATTATTCACAGAGATATTAAGTCGGCAAATATACTTTTGGATGATGTTTATGAGGCACAGGTTGCAGACTTTGGACTTGCCAGACTAACCGATGATGCTAATACCCATGTATCAACTAGGGTGATGGGGACCTTTGGGTACATGGCTCCAGAGTATGCAACGAGTGGAAAATTAACGGATAGATCAGATGTTTTCTCATTTGGTGTTGTCCTCCTTGAGCTTATAACTGGAAGGAAACCTGTTGATCCAACGCAGCCTGTGGGAGATGAGAGCTTGGTTGAGTGGGCTCGTCCACTTCTCCTTCGTGCAATTGAGTCAGGTGACTTTGGTGAACTAGTAGACCCAAGGCTTGAACGGCAATATGTTGACAGTGAAATGTTCACAATGATTGAGGCAGCTGCAGCATGTGTTCGCCATTCTGCCCCAAAACGGCCTCGTATGGTTCAGGTGATAATAATACTAGTGGCAAGAGCCTTAGACAGTGGAGATCAATTATATGATCTATCAAATGGGGTGAAATATGGTCAGAGCACAGTATATGATTCTGGCCAGTATAATGAAGACATTATGAGATTCAGAAGGATGATCAATGGAAGCTTTGATGATTCTGAATTTGATATGTACAGCACAGATTACACTTCAGCAGAAGTATCTGCACCCAGACATACATGGAGGCCACCTAGTTCAGGTGGTGATTCGGAAATTAGAGCTTTCAACAGCCAAAGGGGCAGTTCTGATCACAGGCCTTGA 2223 0.4777 MANKTNGTSSIGNSSSSSSFNSSLSKNSDKPSALSPFSLTADDSDSPGTAPSKTPPPSQSPPSQPVSSPPSPSEANSPPPSPPPSSPPPQSSPPPPLPSPPPPDSSPPPSSPPPPKASSPPPTPSTPPLSPPPSSPPPTPPSQSPPSPPPPNANDSPPPSPSQPNSPPPPTLPTPTLPSPASHVPPTLPPPPPTTGPLPNHPPPQQSPPVPPGSHTKPGTSPSKSHAPSTSPPSGDNNNTGQYVGFALAAVFVLAFIAVILYIILKRKNKLGSFYSVQPTRKSQMKGDVHYYVEEPGFGNGPQDGFYSFQPPHAGAVVQHLRTPSDPAQAQQMNTGQMVFSYDKVAEITNGFASENVIGEGGFGCVYKASMPDGRVGAVKLLKAGSGQGEREFRAEVEIISRVHHRHLVSLIGYCISEQQRVLIYEYVPNGNLNQHLHGSGRLVLDWPKRVKIAIGAARGLAYLHEGCKYILRLCYILFLVTYLNSMGNPKIIHRDIKSANILLDDVYEAQVADFGLARLTDDANTHVSTRVMGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELITGRKPVDPTQPVGDESLVEWARPLLLRAIESGDFGELVDPRLERQYVDSEMFTMIEAAAACVRHSAPKRPRMVQVIIILVARALDSGDQLYDLSNGVKYGQSTVYDSGQYNEDIMRFRRMINGSFDDSEFDMYSTDYTSAEVSAPRHTWRPPSSGGDSEIRAFNSQRGSSDHRP. 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01760 740 MobiDBLite consensus disorder prediction 706 740 - -
Seca9g01760 740 FunFam Proline-rich receptor-like protein kinase PERK8 324 427 - -
Seca9g01760 740 MobiDBLite consensus disorder prediction 1 236 - -
Seca9g01760 740 SMART serkin_6 352 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g01760 740 ProSitePatterns Serine/Threonine protein kinases active-site signature. 492 504 IPR008271 GO:0004672|GO:0006468
Seca9g01760 740 ProSiteProfiles Protein kinase domain profile. 352 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g01760 740 FunFam proline-rich receptor-like protein kinase PERK8 480 665 - -
Seca9g01760 740 MobiDBLite consensus disorder prediction 1 49 - -
Seca9g01760 740 Gene3D Transferase(Phosphotransferase) domain 1 428 655 - -
Seca9g01760 740 MobiDBLite consensus disorder prediction 217 236 - -
Seca9g01760 740 CDD STKc_IRAK 358 645 - -
Seca9g01760 740 SUPERFAMILY Protein kinase-like (PK-like) 329 645 IPR011009 -
Seca9g01760 740 Gene3D Phosphorylase Kinase; domain 1 314 427 - -
Seca9g01760 740 Pfam Protein kinase domain 354 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g01760 740 MobiDBLite consensus disorder prediction 50 216 - -
Seca9g01760 740 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 251 694 IPR047117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01760 Seca-Chr9 28821264 28825556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01760 74 726 Trihelix Transcription Factor Family AT1G70460 47.904 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Seca9g01760 Pkinase 1.4e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01760 - - gmx:100807815 736.487