Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01740 ATGATCCAAAAACCAAACGGGTCGGATCGCCGGATATTGACTTTCCCGGCGGTTCATCCCTGCGAGGACATTGCTCCCTCTACCCTTCTCTCTTCCCTCATAACCCTTTCTAACGCAATTTCCACTTTCCAATACAGTATCTTCCCCTGCAACAAGCGAAACGCGAGAAACGCCATTCGTTTGACCCGGCTTCTCCAACCTTTCCTGCATGAGATCCGAGACCATCATTCGGGTCTTCCTGACCCGGCGACGCTCTCCTTGTCGGAGCTCCATCTCACCTTCCAGAAGCTTCTTTTCTTGCTGGAAGACTCTGGTCGTGAAGGTGCCCGGCTTCGGATGTTAATGGAGTCGGATCGGGTCGCAAACCAGTTTCGGGTCTTGTCCAGATCCATGGCCACGGCTTTGGATGTTTTCCCTTTCGGTTCTGTTTATGTCTCAGAGGAAGCTGCAGAGCAGGTTGTGCTGCTCATGAAGCAAGCAAGGGAGGCTAGGTTTGAGGTTGAGCCTGATGATAAGCATGCTGTGATGGGTGTTATGTCGGTTTTGACCCAGTTTGAGAATCGGGTTGCTCCGAATGAGAGTGATCTGAAGCAGGTTCTTGATTATATTGGGGTTTTGGGGTGGAGTGAGTGTAATAAAGAGGTGAAGTTTTTAGATGCTGAAATTGGGTTTGAGTGCTTGAATGAGGAAAAAAGAAAGGTGGGTTTTTTAAGCAGTTTGATGGGGTTCATGAGTTACTGTAGATGTGTGGTGATGAAAGTTGTAGATAGTGAAGTTTGTAATAAAAAATCTGATGCAAGCAGAGAAAGCATGAATGAAAATGAGATGATTCTGAGTTGTGTTAACCCTGATGATTTTCGATGTCCAATCACTTTGGAGTTGATGAGTGATCCAGTGACAATAGAGACAGGTCATACTTATGATCGTTCCTCAATTCTCAAATGGTTCAGAAGTGGAAATGCAATATGCCCCAAGACAGGTAAAAGGCTTAGCAGCATTGAACTGGTACCCAACTTGATTCTCCGGAGGTTGATTCAGCAATATTGCATTGCCAATGGCATTCCTTTTGCTGATCTGGGTCGTAGGAATCGTGACATCACAAGGACTGTGCAGCCAGGAAGTGTTGCAGCAGAGGAAGCCATGAAAATGTTAGCTGGTTTTCTTTGCAAAAGGCTTGAGAATGGCACTGTGGAAGAGAAGAACCGAGCTGCGTTTGAAATGAGGCTTCTTTCTAAAACAAGCATTTTTAGTAGGTCTTGTTTGGTAGAAGCTGGTTCAGTTCCTCTTTTGTTGAAGTTGCTATCATCAAGAGACTCATCAGCACAAGAGAATGCAGTTGCAGCCCTTTTAAACCTCTCAAAATACCCCAAAAGTAGAGCTGAGATGGTTCAGAATTGGGGGTTAGAATTGATTGTTGGGGTCTTAAAGAAAGGGCTAAAGATTGAAGCTTGCCAGCATGCTGCTGCTGTGTTGTTTTACCTTGCTTCTAATGCTGAGTATGGGAAATTGATAGGGGAGGATCCAGATGCAATTCCATCATTGATCAGGCTCATCAAAGATGGATCTGATCGAAGCAAAAAGAATGGATTGGTTGCAATGTTTGGCCTCCTTAGACACCCTGAAAATCATAGGAAGGTGCTTGCAGCTGGAGCAATTCCTTTGCTGGTTAACTTCTTAAAAGCATGTGAAAAAGAAGACCTTATCACAGACTCATTAGCAATTCTAGCAACTCTGGCTGAGAAAAGTGATGGAGCATTTGCAATCCTTCACTGTGGAGCTTTGCCTTTAGCTGTTGAAATATTGAATTCTTCCACTTCAAGGGTGGGAAAAGAGTACTGTGTGTCTCTATTGCTTTCTCTATCAACAAATGGAGGAGAAGATGTGGTTGCTCATTTAGTAAAGAGCCCTTCTCTTATGGGATCATTATATTCCCAACTCAGTGAAGGCACATCTCGAGCAAGCAAGAAGGCAAGTGCTCTCATCAGGGTCCTCCATGATTTTTATGAAAGGAGGTCCTCTGGTCTCAAGACTTCAGTTGTTCCACAAGAACAATTCATTCACGTATGGTAA 2070 0.4444 MIQKPNGSDRRILTFPAVHPCEDIAPSTLLSSLITLSNAISTFQYSIFPCNKRNARNAIRLTRLLQPFLHEIRDHHSGLPDPATLSLSELHLTFQKLLFLLEDSGREGARLRMLMESDRVANQFRVLSRSMATALDVFPFGSVYVSEEAAEQVVLLMKQAREARFEVEPDDKHAVMGVMSVLTQFENRVAPNESDLKQVLDYIGVLGWSECNKEVKFLDAEIGFECLNEEKRKVGFLSSLMGFMSYCRCVVMKVVDSEVCNKKSDASRESMNENEMILSCVNPDDFRCPITLELMSDPVTIETGHTYDRSSILKWFRSGNAICPKTGKRLSSIELVPNLILRRLIQQYCIANGIPFADLGRRNRDITRTVQPGSVAAEEAMKMLAGFLCKRLENGTVEEKNRAAFEMRLLSKTSIFSRSCLVEAGSVPLLLKLLSSRDSSAQENAVAALLNLSKYPKSRAEMVQNWGLELIVGVLKKGLKIEACQHAAAVLFYLASNAEYGKLIGEDPDAIPSLIRLIKDGSDRSKKNGLVAMFGLLRHPENHRKVLAAGAIPLLVNFLKACEKEDLITDSLAILATLAEKSDGAFAILHCGALPLAVEILNSSTSRVGKEYCVSLLLSLSTNGGEDVVAHLVKSPSLMGSLYSQLSEGTSRASKKASALIRVLHDFYERRSSGLKTSVVPQEQFIHVW. 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01740 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 355 IPR013083 -
Seca9g01740 689 SUPERFAMILY ARM repeat 387 664 IPR016024 -
Seca9g01740 689 SUPERFAMILY RING/U-box 282 356 - -
Seca9g01740 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 425 467 IPR000225 GO:0005515
Seca9g01740 689 ProSiteProfiles U-box domain profile. 281 355 IPR003613 GO:0004842|GO:0016567
Seca9g01740 689 Pfam Armadillo/beta-catenin-like repeat 418 453 IPR000225 GO:0005515
Seca9g01740 689 CDD RING-Ubox_PUB 283 335 IPR045210 -
Seca9g01740 689 SMART arm_5 539 580 IPR000225 GO:0005515
Seca9g01740 689 SMART arm_5 581 622 IPR000225 GO:0005515
Seca9g01740 689 SMART arm_5 413 454 IPR000225 GO:0005515
Seca9g01740 689 SMART arm_5 455 496 IPR000225 GO:0005515
Seca9g01740 689 PANTHER U BOX DOMAIN-CONTAINING 52 664 - -
Seca9g01740 689 FunFam RING-type E3 ubiquitin transferase 362 675 - -
Seca9g01740 689 Pfam U-box domain 283 351 IPR003613 GO:0004842|GO:0016567
Seca9g01740 689 SMART Ubox_2 285 348 IPR003613 GO:0004842|GO:0016567
Seca9g01740 689 FunFam RING-type E3 ubiquitin transferase 282 354 - -
Seca9g01740 689 Gene3D - 365 673 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01740 Seca-Chr9 28569721 28571790 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01740 1 689 U-box Gene Family AT1G60190 46.143 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01740 - - gmx:100795816 979.933