Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01690 ATGGAAAGGGATGTCTGTGAACTTTCCCCTGCATGGGATGGTGATAATGGTAATTCTGTGGAGAAAAGGCTCAGGTTATTTGGCTTTGAGCTAAATCCATCAAAGAATAATAATGAGGGTTGTGTCAAAGAGGCTGGTGAAGGTGATGAAAGTGTGCACTCCTCTAACTCAGTTTCATCAGGAGGAGAGAAAACTGTTCAAGAGAAGAGCTCAGCCAGAGACCCAGATGAGAGAAAGTTTGAGTGCCAATACTGTTTCAAGGAATTTGCAAACTCACAAGCATTAGGAGGCCATCAAAATGCTCACAAGAAAGAAAGAATGAAGAAGAAAAGATTGCAGCTTCAAGCTAAGAGGGCTAGCATAAACTATTACCTACAACCTTTTCAAACAAACCATGGTTCTGATACTCCTTGGTTTTATGATCCCTCTTCCTATAACTCTGAGTTCACCTTATGTGAAGAATCTCAGATTAGCTTCAATTCAAATGTTCAAGATACCAACTTTTTTGTTGATCAGAAATCTAGTTGGTATTCTCTACCATCCCAACCTCCTTCCCAAAAAGATACTTGCATGTTCACTTTCTCCAATACAGATAATAGGCCTTTCATCTTCAAGCCTTGTCACTTCCCTGCTTCAAACCAGAGCCATAGTAAAGCTTTAGATCTTCAACTAGGCCTCAACTTGGAGTCAAATACAAGGAACTCTTTGAGAAGGGCATAA 720 0.4014 MERDVCELSPAWDGDNGNSVEKRLRLFGFELNPSKNNNEGCVKEAGEGDESVHSSNSVSSGGEKTVQEKSSARDPDERKFECQYCFKEFANSQALGGHQNAHKKERMKKKRLQLQAKRASINYYLQPFQTNHGSDTPWFYDPSSYNSEFTLCEESQISFNSNVQDTNFFVDQKSSWYSLPSQPPSQKDTCMFTFSNTDNRPFIFKPCHFPASNQSHSKALDLQLGLNLESNTRNSLRRA. 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01690 239 MobiDBLite consensus disorder prediction 51 66 - -
Seca9g01690 239 PANTHER ZINC FINGER PROTEIN 5 19 229 IPR044299 GO:0010090
Seca9g01690 239 SUPERFAMILY beta-beta-alpha zinc fingers 76 107 IPR036236 -
Seca9g01690 239 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Seca9g01690 239 Gene3D Classic Zinc Finger 54 133 - -
Seca9g01690 239 FunFam zinc finger protein 5 54 133 - -
Seca9g01690 239 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 107 IPR013087 -
Seca9g01690 239 MobiDBLite consensus disorder prediction 31 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01690 Seca-Chr9 27996302 27997021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01690 77 142 C2H2 Transcription Factor Family AT1G68360 58.209 5.21e-17 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca9g01690 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01690 - - gmx:100799857 369.392