Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01685 ATGGGTTCATCCTCAGAAAAAACTTCCTCCTCTGCGTTGAAGCTTTTTGGTTTCCCTTTAAGCAGTACTGCTATCTGCAGTGACAGTGAGGAAGCTCCTCAGAAAATCGAGTGTCCATACTGTGACCGAAAATTTCAGAATTTTCAAGCGCTGGGAGGGCACCAAAATGCGCATAGGAGAGAGAGGCTAATGGCTAGGCTATCCCGACTGCACTATATGCATCCACATCAAAACAACAGCCAAATGCTTCAACCAACTGTATTATTATCACAAACCTCTGCTGCTGATCATGAAGCTCAGATCTGGAGAGAATTACCAAAGCTACCTGTGGCGGAGCCACCAGCTACGCGCCACCCTCCTATAAGACAAGTACCAGTACAAGGGGTTGATAATAATCTTGATCTTGAATTGAGACTAGCTACCAGCTAG 429 0.4569 MGSSSEKTSSSALKLFGFPLSSTAICSDSEEAPQKIECPYCDRKFQNFQALGGHQNAHRRERLMARLSRLHYMHPHQNNSQMLQPTVLLSQTSAADHEAQIWRELPKLPVAEPPATRHPPIRQVPVQGVDNNLDLELRLATS. 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01685 142 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
Seca9g01685 142 PANTHER ZINC FINGER PROTEIN 5 4 95 IPR044299 GO:0010090
Seca9g01685 142 SUPERFAMILY beta-beta-alpha zinc fingers 36 64 IPR036236 -
Seca9g01685 142 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Seca9g01685 142 Pfam C2H2-type zinc finger 37 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01685 Seca-Chr9 27889871 27890299 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01685 8 78 C2H2 Transcription Factor Family AT1G67030 41.111 1.30e-13 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca9g01685 zf-C2H2_6 1.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01685 - - gmx:102669455 135.576