Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01658 ATGAAGAGGTCAAGGGATGATGTTTTCATGGGTTCTTCGCAACTCAAACGGCCCATGGTGTCTTCCCGAGGAGAAACGTCTGGGCAACCACAGATGATGAATGGAGGTGCTCAGAAACTGACTACTAATGATGCCTTAGCATACCTCAAGGCAGTAAAGGACATCTTTCAAGATAAGAGGGACAAATATGATGACTTTTTGGAGGTCATGAAAGATTTCAAGGCCCAAAGAATTGATACTGCAGGTGTCATAGCAAGAGTGAAGGAACTGTTTAAAGGGCATAGAGATCTAATATTGGGATTTAACACTTTCTTGCCAAAGGGATATGAAATCACACTTCCACTGGAGGATGAACAACCTCCCCCAAAGAAGCCTGTTGAATTTGAAGAAGCTATAAATTTTGTGAACAAGATAAAGACTCGATTTCAAGGTGATGATCATGTTTACAAGTCATTTCTAGACATATTGAATATGTACCGAAAGGAAAACAAGTCTATCACTGAGGTCTACCAGGAGGTTGCTTCACTTTTCCAAGACCACCCTGATCTTCTTGATGAGTTCACTCATTTTCTTCCGGACACTTCTGCAGCTGCCTCTACTCATTATGCTTCTGCTCGAAATTCTGTGCTCCGTGATAGGAGCTCTGCAATGCCAACAGTGCGGCAAATGCATGTTGAAAAGAGAGAAAGGACCATGGTTTCACATGGTGATCGTGACCCTAGTGTTGACCGTCCTGACCCAGATCATGACAGAGGTTTGTTGAGGGCAGAAAAGGAGCAGAGGAGGCGTGTGGAGAAGGAAAAGGACCATAGAGAAGATAGAGATAGGAGAGAACGGGAAAGGGATGATAGAGATTATGAGCATGATGGGGGTCGAGACAGGGAGCGGTTATCCCACAAACGGAAATCTGACCGTAAGGCTGAAGACTCTGGAGCTGAACCATTGCTTGATGCGGATGAAAATTTTGGTATGCGCCCTATGTCATCCACTTGTGATGATAAAAATTCTCTGAAAAGTATGTATAGTCAGGAATTAGCTTTCTGTGATAAAGTCAAAGAAAAATTACGAAATCCTGACGACTACCAGGAATTTTTGAAGTGTTTACATATTTACAGCAGGGAAATAATTACCCGACAAGAATTGCAGTCATTGGTGGGTGATTTACTTGGAAAAGATACAGATCTTATGGAGGGGTTTAATGAATTTTTGCTACAAGCTGAAAAGAATGGTGGATTCCTTGCTGGTGTCATGAATAAAAAGTCCTTATGGAATGAAGGACATGGACCGAAACAAATGAAGGCCGAAGACAGGGATAGAGATAGGGATCGAGATAGAGATCGATACAGGGATGATGGGATGAAAGAAAGGGATCGTGAATTCCGAGAAAGGGACAAATCTACTGTGATTTCCAACAAGGATGTTTCAGGTCCTAAGATGTCTCTATATCCCAGCAAGGACAAGTATTTCTCAAAACCTATAAATGAACTGGATCTTTCTAACTGTGACCGGTGCACTCCTAGTTACCGTCTCCTACCAAAAAATGTATACTGGTTTTACTTACCTTTTTGTATTTTATCTTATTCTAGTGGAATCTCTGAGGTTTTCTTGCTGATTGTGTTCTTCATGTGTATTATCTGTGTTATGCAGTATCCAATACCTATAGCTAGCCAGAGAACAGAACTTGGTGCAGAAGTGTTGAATGATCACTGGGTGTCTGTCACTTCAGGAAGTGAGGATTATTCCTTTAAACACATGCGCAAAAATCAGTATGAAGAGAGTTTGTTTAGATGTGAAGATGACAGGTTTGAACTCGATATGTTGTTAGAGTCTGTAAATGTGACAACGAAACGAGTAGAAGAGCTGTTAGAAAAGATCAATAATAACATAATTAAAGGAGACAGCCCACTTCGTATTGATGAGCACTTAACAGCCCTAAATCTTAGGTGTATTGAACGATTATATGGTGACCATGGGCTTGATGTGATGGACGTGCTAAGGAAGAATGCATCTCTAGCTTTGCCGGTGATATTAACACGCTTGAAGCAGAAACAGGATGAGTGGGCAAGATGTCGTGCTGATTTTAGTAAAGTTTGGGCTGAAATATATGCTAAGAACTATCACAAATCTCTTGATCATCGTAGCTTCTACTTTAAGCAACAAGATACAAAAAGCTTGAGCACCAAAGCCTTACTGGCAGAAATCAAAGAGATTAGTGAGAAGAAACGCAAAGAAGATGATGTTCTTCTTGCGATTGCTGCTGGAAATAGACGGCCTATTCATCCAAACTTGGAGTTTAAGTATCCTGATCCAGACATTCATGAAGATTTGTATCAGCTCATAAAATATTCATGTGGAGAAGTTTGCACAACAGAACAGTTGGATAAAGTTATGAAGGTTTGGACAACCTTTTTAGAACCCTTGCTTTGTGTTCCTTCTCGGCCCCAGGGTGCTGAGGATACAGAAGATGTTGTCAAGGCTAAAAATAATTCTGTCAAAAGTGGCACTGTAAGTGTTGCTGAAAGTGATGGTAGTCCTGGTGTTGGTGCTGCCATAATGAATCCAAAGCATATAAATACTTCTAGAAATGGGGACGAGTGCAATGCATTAGATCAATCAACTTCTAGCAAAGCATGGCAATCAAATGGTGATAGTGGGGTTAGAGAAGATAAGTGTCTTGATTCAGACCGTACTGTGTGTAAAACTGAAACTTTGGGCGGCAATACACAACATGGCAAAACGAGTATTATTGCATTCACGTCTGATGAACTATCAGGAGCCAATAAGCAAGACCAGTCCAGTGAGCGGTTAGTGAATGTCTCACCAGCATCTGGAATGGAGCAAAGTAATGGAAGAACAAAGATAGATAATGCATCAGGACTCACTGCTACTCCATCTAGAAATGGTAACGTCTCTGTCGAGGGAGGACTTGGGTTGCCTTCATCAGAGGGTGGTGATTCTACAAAACCAGGTACCTCCACAAATGGGGCCATCACTGGAGGCACCGAAGTTCGCAGATACCAAGAGGAATCAGTTCGAAACTTCAAAAGTGAAAGAGAAGAGGGTGAGTTATCTCCAAATGGAGACTTTGAAGAGGATAACTTTGCAGTTTATGGAGATACTGGTTTGGATGCAGTGCATAAAGTAAAGGATGGGAGTGCGAGTCGGCAATACCAAAATAGACGTGGGGAAGAAGTTTGTGGTGAAGCCAGAGGAGAAAACGACGTGGATGCTGATGATGAGGGTGATGAAAGTCATCACAGGTCATCAGAGGACAGTGAAAATGCTTCTGAAAATGTTGATGTTTCTGGAAGCGAGTCTGCTGATGGTGAGGAGTGTTTTCGAGAAGAGCATGAGGATGGGGAACATGATAACAAGGCTGAGAGTGAAGGTGAAGCTGAAGGAATGGCTGATGCCCATGATGTTGAAGGGGATGGAACATCTTTGCCATTTTCTGAGCGCTTTCTACTAACCGTGAAGCCTTTGGCAAAGCATGTTCCCCCAGTGTTACAAGAGAAAGACAGGAATTCTCGAATTTTTTATGGCAATGATTCCTTTTATGTGCTGCTAAGACTTCATCAGACATTGTATGAGAGGATACAATCAGCAAAGATTAACTCATCATCTGCTGAAAGGAAATGGAGGGCTTCAAATGATACAAGTTCTACTGATCAATATGACAGGTTCATGAATGCCCTTTACAGTTTGCTGGATGGTTCTTCTGATAATACAAAATTTGAGGATGACTGTCGAGCTATTATTGGAACTCAATCATATGTCTTGTTCACGTTAGACAAACTGATATATAAACTTGTTAAACAGCTTCAAGCTGTCGCCAGTGATGAAATGGATAATAAGCTTCTCCAACTATATGCATATGAGAAATCAAGAAAACCTGGGAGGTTAATCGATATTGTCTATCATGAAAATGCCCGTGTTCTTCTTCATGATGAGAACATATATCGAATTGAATACTCTCCTGGTCCAAAGAAACTGTCTATTCAACTGATGGACTGTGGACATGATAAGCCTGAAGTGACTGCTGTGTCGGTGGACCCTAATTTTTCAGCCTATCTGCACAATGACTTCCTCTCTGTTGTCCCTGACAAAAAGGAGAAGTCAGGGATTTTCTTGAAGAGGAATAAACGTAAATATGCCTGTGGTGATGAATTTTCAAGCCAGGCTATGGAAGGACTACTAGTTATTAATGGTTTGGAGTGTAAGATTGCTTGCAGTTCTTCTAAGGTGTCATATGTTTTAGATACCGAAGACTATCTGTTTCGGATGAGAAGGAAAAGAAAAGCCTTACATCTGAAGAGTTCATGCCATGAACAGTCGAAGTCTTCCAGCCGATCACAACGGTTCCGGAAGTTGTTTTCCATTTGA 4383 0.4141 MKRSRDDVFMGSSQLKRPMVSSRGETSGQPQMMNGGAQKLTTNDALAYLKAVKDIFQDKRDKYDDFLEVMKDFKAQRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEITLPLEDEQPPPKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYQEVASLFQDHPDLLDEFTHFLPDTSAAASTHYASARNSVLRDRSSAMPTVRQMHVEKRERTMVSHGDRDPSVDRPDPDHDRGLLRAEKEQRRRVEKEKDHREDRDRRERERDDRDYEHDGGRDRERLSHKRKSDRKAEDSGAEPLLDADENFGMRPMSSTCDDKNSLKSMYSQELAFCDKVKEKLRNPDDYQEFLKCLHIYSREIITRQELQSLVGDLLGKDTDLMEGFNEFLLQAEKNGGFLAGVMNKKSLWNEGHGPKQMKAEDRDRDRDRDRDRYRDDGMKERDREFRERDKSTVISNKDVSGPKMSLYPSKDKYFSKPINELDLSNCDRCTPSYRLLPKNVYWFYLPFCILSYSSGISEVFLLIVFFMCIICVMQYPIPIASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKINNNIIKGDSPLRIDEHLTALNLRCIERLYGDHGLDVMDVLRKNASLALPVILTRLKQKQDEWARCRADFSKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKRKEDDVLLAIAAGNRRPIHPNLEFKYPDPDIHEDLYQLIKYSCGEVCTTEQLDKVMKVWTTFLEPLLCVPSRPQGAEDTEDVVKAKNNSVKSGTVSVAESDGSPGVGAAIMNPKHINTSRNGDECNALDQSTSSKAWQSNGDSGVREDKCLDSDRTVCKTETLGGNTQHGKTSIIAFTSDELSGANKQDQSSERLVNVSPASGMEQSNGRTKIDNASGLTATPSRNGNVSVEGGLGLPSSEGGDSTKPGTSTNGAITGGTEVRRYQEESVRNFKSEREEGELSPNGDFEEDNFAVYGDTGLDAVHKVKDGSASRQYQNRRGEEVCGEARGENDVDADDEGDESHHRSSEDSENASENVDVSGSESADGEECFREEHEDGEHDNKAESEGEAEGMADAHDVEGDGTSLPFSERFLLTVKPLAKHVPPVLQEKDRNSRIFYGNDSFYVLLRLHQTLYERIQSAKINSSSAERKWRASNDTSSTDQYDRFMNALYSLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVASDEMDNKLLQLYAYEKSRKPGRLIDIVYHENARVLLHDENIYRIEYSPGPKKLSIQLMDCGHDKPEVTAVSVDPNFSAYLHNDFLSVVPDKKEKSGIFLKRNKRKYACGDEFSSQAMEGLLVINGLECKIACSSSKVSYVLDTEDYLFRMRRKRKALHLKSSCHEQSKSSSRSQRFRKLFSI. 1461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01658 1460 Gene3D Paired amphipathic helix 335 407 IPR036600 GO:0006355
Seca9g01658 1460 MobiDBLite consensus disorder prediction 1441 1460 - -
Seca9g01658 1460 MobiDBLite consensus disorder prediction 1005 1023 - -
Seca9g01658 1460 MobiDBLite consensus disorder prediction 429 464 - -
Seca9g01658 1460 Pfam Sin3 family co-repressor 550 628 IPR013194 -
Seca9g01658 1460 MobiDBLite consensus disorder prediction 423 464 - -
Seca9g01658 1460 MobiDBLite consensus disorder prediction 1 34 - -
Seca9g01658 1460 MobiDBLite consensus disorder prediction 1440 1460 - -
Seca9g01658 1460 Gene3D Paired amphipathic helix 123 195 IPR036600 GO:0006355
Seca9g01658 1460 MobiDBLite consensus disorder prediction 923 970 - -
Seca9g01658 1460 SMART hdac_interact2seq4b 500 635 IPR013194 -
Seca9g01658 1460 MobiDBLite consensus disorder prediction 984 1000 - -
Seca9g01658 1460 MobiDBLite consensus disorder prediction 923 1032 - -
Seca9g01658 1460 Pfam C-terminal domain of Sin3a protein 1179 1425 IPR031693 -
Seca9g01658 1460 SUPERFAMILY PAH2 domain 335 403 IPR036600 GO:0006355
Seca9g01658 1460 SUPERFAMILY PAH2 domain 120 193 IPR036600 GO:0006355
Seca9g01658 1460 Coils Coil 254 274 - -
Seca9g01658 1460 FunFam Paired amphipathic helix SIN3-like protein 123 194 - -
Seca9g01658 1460 FunFam Paired amphipathic helix protein SIN3 334 408 - -
Seca9g01658 1460 FunFam Paired amphipathic helix protein Sin3 44 106 - -
Seca9g01658 1460 ProSiteProfiles PAH domain profile. 337 406 IPR003822 GO:0006355
Seca9g01658 1460 Coils Coil 608 628 - -
Seca9g01658 1460 MobiDBLite consensus disorder prediction 1049 1140 - -
Seca9g01658 1460 SUPERFAMILY PAH2 domain 38 107 IPR036600 GO:0006355
Seca9g01658 1460 MobiDBLite consensus disorder prediction 1107 1140 - -
Seca9g01658 1460 MobiDBLite consensus disorder prediction 206 331 - -
Seca9g01658 1460 MobiDBLite consensus disorder prediction 1080 1094 - -
Seca9g01658 1460 MobiDBLite consensus disorder prediction 222 313 - -
Seca9g01658 1460 MobiDBLite consensus disorder prediction 861 882 - -
Seca9g01658 1460 MobiDBLite consensus disorder prediction 15 34 - -
Seca9g01658 1460 Pfam Paired amphipathic helix repeat 61 105 IPR003822 GO:0006355
Seca9g01658 1460 Pfam Paired amphipathic helix repeat 359 403 IPR003822 GO:0006355
Seca9g01658 1460 Pfam Paired amphipathic helix repeat 147 191 IPR003822 GO:0006355
Seca9g01658 1460 ProSiteProfiles PAH domain profile. 38 108 IPR003822 GO:0006355
Seca9g01658 1460 ProSiteProfiles PAH domain profile. 124 194 IPR003822 GO:0006355
Seca9g01658 1460 PANTHER SIN3B-RELATED 549 1323 IPR039774 GO:0003714
Seca9g01658 1460 MobiDBLite consensus disorder prediction 861 886 - -
Seca9g01658 1460 Gene3D Paired amphipathic helix 44 106 IPR036600 GO:0006355
Seca9g01658 1460 MobiDBLite consensus disorder prediction 1049 1072 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01658 Seca-Chr9 27560355 27574156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01658 29 143 WRKY Transcription Factor Family AT4G12020 49.573 6.92e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca9g01658 Sin3a_C 1.4e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01658 K11644 - gmx:100811928 2333.52