Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01654 ATGTCTCGCACGTGCTCACAGTGCGGAAACAACGGCCACAATTCCCGAACATGCACCGACGGCGGCGCCGCCGCGTCCGGCGGAGAGAACGGCTTCATGCTATTCGGCGTGCGAGTCACCGAAGGGAGCTCCTCTTTCAGGAAAAGCGCTAGTATGAACAACCTTTCTCAGTACGAGCAACTACCTCCGCAAGATTCCAACGCCGCCGATGCCGGCTACGCCTCCGACGACGTCGTTCACGCCTCCGGCCGCAGCCGCGAGCGCAAGCGAGGTGTTCCTTGGACGGAGGAAGAGCATAGGCTATTCCTATTGGGGCTGCAAAAGGTTGGCAAAGGAGATTGGAGAGGGATTTCTAGAAACTTCGTTAAAACTCGCACTCCAACTCAGGTTGCAAGTCATGCTCAGAAGTATTTCCTCCGCCGTCACAACCAGAATCGCCGCCGCCGGAGATCTAGTCTTTTTGACATAACCACCGATACGGTGATGGAATCTTCTAGTATAATGGAAGAAGAAGGAGCTCACCAAGAAACGGTGCTGCCACCTACTCCCACCGCATATCCGCCGTCACATTACGGCGGCTTCCCCGGCTCTGCTTTTCCGATGGCTCTGGCTCCGGTGGTGTTGCCGGTGGCTGATAGACTGGCCAAGCCGATTAGGCCAACGCCGATTCTGCCGGTGCCTCCGTCTTCGAAAATGGCGAATTTGAACTTGAAAGAGAAAGCTCCTCTTTCTCCCATGGAGCCTTTGCCATTGTCGCTGAAGCTGCCTCCTCCGCTTCCACCGTCGAAGGATCAATCGCCGGCAACTAGTAACCACTCATCGCCGTCGTCTCCGTCGTCGTCGTCAGCATCGGCTTTTCAGGCTATGTCAGCGGGGAAGTTCAGCGGTGGGGGAGATAGTATCATCAGTGTTGCTTGA 918 0.561 MSRTCSQCGNNGHNSRTCTDGGAAASGGENGFMLFGVRVTEGSSSFRKSASMNNLSQYEQLPPQDSNAADAGYASDDVVHASGRSRERKRGVPWTEEEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHNQNRRRRRSSLFDITTDTVMESSSIMEEEGAHQETVLPPTPTAYPPSHYGGFPGSAFPMALAPVVLPVADRLAKPIRPTPILPVPPSSKMANLNLKEKAPLSPMEPLPLSLKLPPPLPPSKDQSPATSNHSSPSSPSSSSASAFQAMSAGKFSGGGDSIISVA. 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01654 305 ProSiteProfiles SANT domain profile. 89 142 IPR017884 -
Seca9g01654 305 Pfam Myb-like DNA-binding domain 93 138 IPR001005 -
Seca9g01654 305 MobiDBLite consensus disorder prediction 242 305 - -
Seca9g01654 305 NCBIfam myb-like DNA-binding domain, SHAQKYF class 89 140 IPR006447 GO:0003677
Seca9g01654 305 CDD SANT 93 138 IPR001005 -
Seca9g01654 305 SMART sant 90 140 IPR001005 -
Seca9g01654 305 ProSiteProfiles Zinc finger CCHC-type profile. 5 20 IPR001878 GO:0003676|GO:0008270
Seca9g01654 305 MobiDBLite consensus disorder prediction 265 289 - -
Seca9g01654 305 PANTHER TRANSCRIPTION FACTOR KUA1 1 275 - -
Seca9g01654 305 FunFam transcription factor MYB1R1 92 143 - -
Seca9g01654 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 142 IPR017930 -
Seca9g01654 305 MobiDBLite consensus disorder prediction 249 264 - -
Seca9g01654 305 SUPERFAMILY Homeodomain-like 88 141 IPR009057 -
Seca9g01654 305 ProSiteProfiles Myb-like domain profile. 86 138 IPR001005 -
Seca9g01654 305 Gene3D - 92 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01654 Seca-Chr9 27492879 27494868 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca9g01654 Myb_DNA-binding 9.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01654 - - gmx:780554 403.29