Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01641 ATGGATCCGGCAGCAATGATGAACGGGGTTGCCAACACGGCGTCGTATCACTTGGCGGAGATCTGGCAGTTTCCGTCGCCGACTGCCACCGAGTCCGGCGGTGGCTTGGGGCTGAGGAGGCCGCAGTTCGGGCACGGGTTCGGTGATTTGGCCACGTGTCCGACCCGGGACGATCCAGGTACTGACCCGATCATTCCAGAGCAGAGGGCGGCTCCGGCGGTGAACCATGGACGGAAAAGGCGCGACTCTGAGGAGGAATCAGTGAAGGGTGTCTCCACCAGCAATGGCGGTGGCGGTGGCAATGGCAATGGCGTGAATAATGATGGTGGTGATGGAAAGCGGATTAAGACACCAGGGAACAGGAATGAGAACACTAAAGGTGAAGTAGAACCCAGTTCAGGAAAGCTTGCGGAGCAAACTACTACTCAGCCACCTCCTGAGCCTCCAAAGCAAGACTACATCCATGTCCGAGCCAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCAGAAAGAGCCAGAAGGGAAAAGATCAGTGAAAGGATGAAAATTCTTCAGGATTTAGTCCCTGGTTGTAATAAGGTTATTGGAAAAGCATTGGTCCTTGATGAGATAATCAATTATATCCAATCACTTCAGCGCCAAGTTGAGTTTTTGTCGATGAAGCTTGAAGCAGTAAATTCAAGAGTGACCCCTGGCATTGAGGTGTTTCCTCATAAAGATGTAAGTATTAAACATTTGATCAGCAAACATTTGATACAACCGCCATGCCATTTGCTTCACAAGCTACAAGAGAGTACAACCGGGGTTCATCACCAGAGTGGTTACATATGCAGGTGGGAAGTGGTTTTGAAAGAGCAACGTAGTCTATGCAATCCCATCACCTGA 888 0.5045 MDPAAMMNGVANTASYHLAEIWQFPSPTATESGGGLGLRRPQFGHGFGDLATCPTRDDPGTDPIIPEQRAAPAVNHGRKRRDSEEESVKGVSTSNGGGGGNGNGVNNDGGDGKRIKTPGNRNENTKGEVEPSSGKLAEQTTTQPPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRVTPGIEVFPHKDVSIKHLISKHLIQPPCHLLHKLQESTTGVHHQSGYICRWEVVLKEQRSLCNPIT. 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01641 295 MobiDBLite consensus disorder prediction 73 88 - -
Seca9g01641 295 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 84 264 IPR024097 GO:0006355
Seca9g01641 295 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 212 IPR011598 GO:0046983
Seca9g01641 295 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 230 IPR036638 GO:0046983
Seca9g01641 295 CDD bHLH_AtBPE_like 152 237 - -
Seca9g01641 295 MobiDBLite consensus disorder prediction 28 152 - -
Seca9g01641 295 SMART finulus 168 218 IPR011598 GO:0046983
Seca9g01641 295 FunFam Basic helix-loop-helix transcription factor 159 231 - -
Seca9g01641 295 Pfam Helix-loop-helix DNA-binding domain 166 213 IPR011598 GO:0046983
Seca9g01641 295 MobiDBLite consensus disorder prediction 124 141 - -
Seca9g01641 295 Gene3D - 159 232 IPR036638 GO:0046983
Seca9g01641 295 Coils Coil 209 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01641 Seca-Chr9 27301865 27305334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01641 1 248 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 52.988 6.34e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca9g01641 HLH 2.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01641 - - gmx:100794893 292.737