Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01606 ATGAGTCGCAAGAGAGACAGACCCGACTTTTCCCGAAACGCTGCCAAGCGCCGCCGCCCCCTGCCAGAGCCCACAGAGGACGATAGGCCCGCGCCGAGGCCTCCGCCGCCGTCCGCGGTGGTCGTCATGGGCCTCCCTATGGACTGCTCCGTGCTCGATCTCAAGTCCCGATTCGAGATCTACGGCTCCATCTCCCGCATCCGCATCGACCGCGACGCCGTCGGCTACATCACCTACCGAAACAAGGACTCAGCCGACGCCGCCATCGCCGCCGGCCTCGACACTTCCTTCGGAATCACAGTCAACTCCAAAAAGGTTCAGGTTTTGTGGGCTACGGATCCTCTTGCCATGTGGAGGGAAGGAGTTGGTAATAACAAGGATAAAGGGTCTATATCAAAGCTTGTGCGTGCTGAGGTGCCCTTGAGCAGGCATGGAAGAGGCAATAGACTCGCTTCAGCTATTGGGACTACCAAAAGTAATGAGGATAGCTCAGTTCTAGAAGTGCCTTTCAGGGGCAGAGAAATTGTTGCTTACGATGATATCCTAGAACAGAAAGTAAGTAGTGAGATGGAAGAAGATGAACGATGGAAAAAAGCAGAGAAGAAGGAAGATGAATCACAACAACGAATATGGAGTTGGGGTGCTGGAACCGAGGGTCAGTTAGGAACAAGCAATCTTCAGGACGAGCACATCCCTCAACTCCTTCACCAACCCTCTCTCTCCTCCATCTCTTCCCTTGCCTGTGGCGGCGCCCACGTCATCGCCTTGACCTCTGCTGGTAAGGTATTGTCTTGGGGTAGGGGCAATTCTGGTCAACTAGGCCATGAGGAGGTTGTTAATAACGCCTTGTATCCCAAGACTGTAACATCATTGGACGGCTACTTCATAACCCATGTCTCAGCTGGCTGGAGCCACTCAGGTTTTGTTTCAGATTCTGGGTGCCTGTTTACTTGTGGGGATGGCTCGTTTGGTCAACTTGGGCATGGGGATTATGCCTCACACTGCTCCCCTGTCAGAGTGTCATGCTTTGTTGATCAGCATGTTGCACAGGTAGCATGTGGCATGCGCCACTCCCTTGTCTTGTTGAAAGATTGTCCATCAAATCAAGTTTATGGTTTTGGCTCTGGGAAGCGTGGTCAACTGGGTGTCTCCAAAGATAGGATCAAATCTATTAATCTTCCTAAAGTTGTTAGTGGCTTTGAAGATGTAGAAATAGTTGAAATTGCTGCAAATGGAGATCACAGTGCTGCAGTATCTGTTGATGGGCATCTTTACACCTGGGGAAGAGGCTTCAAGGGCTTTGAAGATTCTCACTTTCCGCAATGCTTAAACTCTACTTTGAATTTTACCAAAGCCACTCTGGGATGGAACCATGCTTTAGCTATGAATGATGAAGGGGAAGTTTACATGCTTGGTGGCAACCACCTTGGAGGGCTTAGTGATCTTCAGAATGTAAGCCCAGCTAAGCAGTTACCTGATGCAAGAGAATCCAATTTGGAGAGAGTCTCAGGCCTTGATGGGACGAAGGTTTCTGATATTGCTACCGGAGCTGAGCATTCCGTCCTTAATGGAGAAGTAAAGACATGGGGTTGGGGTGAGCACGGTCAACTTGGCTTAGGGGATACTTGTGATCGGATCAGTCCTGTTACCGTAAATCTCGGTTATGATCCAAATGAAGCTGCATCAATCAGAGTTTACTGTGGAAGTGGGTTCACGTTTGCTTTAACCATGCCCTAA 1737 0.4997 MSRKRDRPDFSRNAAKRRRPLPEPTEDDRPAPRPPPPSAVVVMGLPMDCSVLDLKSRFEIYGSISRIRIDRDAVGYITYRNKDSADAAIAAGLDTSFGITVNSKKVQVLWATDPLAMWREGVGNNKDKGSISKLVRAEVPLSRHGRGNRLASAIGTTKSNEDSSVLEVPFRGREIVAYDDILEQKVSSEMEEDERWKKAEKKEDESQQRIWSWGAGTEGQLGTSNLQDEHIPQLLHQPSLSSISSLACGGAHVIALTSAGKVLSWGRGNSGQLGHEEVVNNALYPKTVTSLDGYFITHVSAGWSHSGFVSDSGCLFTCGDGSFGQLGHGDYASHCSPVRVSCFVDQHVAQVACGMRHSLVLLKDCPSNQVYGFGSGKRGQLGVSKDRIKSINLPKVVSGFEDVEIVEIAANGDHSAAVSVDGHLYTWGRGFKGFEDSHFPQCLNSTLNFTKATLGWNHALAMNDEGEVYMLGGNHLGGLSDLQNVSPAKQLPDARESNLERVSGLDGTKVSDIATGAEHSVLNGEVKTWGWGEHGQLGLGDTCDRISPVTVNLGYDPNEAASIRVYCGSGFTFALTMP. 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01606 578 CDD RRM_SF 44 102 - -
Seca9g01606 578 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 113 IPR000504 GO:0003723
Seca9g01606 578 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 90 IPR000504 GO:0003723
Seca9g01606 578 SUPERFAMILY RNA-binding domain, RBD 24 119 IPR035979 GO:0003676
Seca9g01606 578 SMART rrm1_1 39 109 IPR000504 GO:0003723
Seca9g01606 578 Gene3D - 179 431 IPR009091 -
Seca9g01606 578 PRINTS Chromosome condensation regulator RCC1 signature 243 256 IPR000408 -
Seca9g01606 578 PRINTS Chromosome condensation regulator RCC1 signature 455 473 IPR000408 -
Seca9g01606 578 PRINTS Chromosome condensation regulator RCC1 signature 209 225 IPR000408 -
Seca9g01606 578 PRINTS Chromosome condensation regulator RCC1 signature 262 278 IPR000408 -
Seca9g01606 578 PRINTS Chromosome condensation regulator RCC1 signature 519 540 IPR000408 -
Seca9g01606 578 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 351 361 IPR000408 -
Seca9g01606 578 Gene3D - 1 115 IPR012677 -
Seca9g01606 578 Gene3D - 432 577 IPR009091 -
Seca9g01606 578 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 524 578 IPR000408 -
Seca9g01606 578 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 313 364 IPR000408 -
Seca9g01606 578 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 368 421 IPR000408 -
Seca9g01606 578 MobiDBLite consensus disorder prediction 1 38 - -
Seca9g01606 578 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 207 306 - -
Seca9g01606 578 Pfam Regulator of chromosome condensation (RCC1) repeat 524 575 IPR000408 -
Seca9g01606 578 Pfam Regulator of chromosome condensation (RCC1) repeat 369 418 IPR000408 -
Seca9g01606 578 Pfam Regulator of chromosome condensation (RCC1) repeat 209 256 IPR000408 -
Seca9g01606 578 Pfam Regulator of chromosome condensation (RCC1) repeat 260 308 IPR000408 -
Seca9g01606 578 Pfam Regulator of chromosome condensation (RCC1) repeat 312 361 IPR000408 -
Seca9g01606 578 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 260 312 IPR000408 -
Seca9g01606 578 MobiDBLite consensus disorder prediction 1 30 - -
Seca9g01606 578 SUPERFAMILY RCC1/BLIP-II 207 479 IPR009091 -
Seca9g01606 578 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 208 259 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01606 Seca-Chr9 26919128 26929022 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01606 1 182 Homeobox Transcription Factor Family AT1G27050 50.244 5.21e-50 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01606 - - gmx:100793672 937.562