Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01598 ATGGCAAGTGGCAAGCTTTATGGGGGTTCCAACATGACAACACTTCTTCTCCAAAACGATAGGCTTCCTTGCTCCTCTGAAGTCCTTGAATCTCTCTGGGTTCACACCACTACCCCTGCTTCTTTCCAAGGTTCTAAATCGGTGGTTGATTTTGAGAATGTTAGTGGGAGCAGGGTGACAGATAGGCCCTTCTTTCAACCGCTTGAAAAGGAAGAGAACGGTGATGAGGATTACGAAACGTGCTTCCATCAACCAGGAAAGAAAAGGAGGCTCACAAGCGAACAAGTTCAGTTTCTTGAAAGGAACTTTGAGGTAGAAAACAAGCTTGAACCTGAAAGGAAGGTGCAGCTTGCAAAGGAGCTTGGCTTGCAGCCAAGGCAAGTTGCTATATGGTTCCAAAACCGAAGGGCAAGGTTTAAGACCAAACAGCTAGAAAAAGACTATGGCACATTGAAAGCTAGTTATGACAGACTCAAAGATGACTATGAAAATCTTCTTCAAGAGAATGACAAGTTAAAAGAAGAGGTGAATTCTCTGAAGAACAAATTGATTCCAAGAGATAAAGAGAAAGAGAATTCAGATGACAAGTCATCCCCTGATGCTGTCAATTCACCCCACAAAGAGCCTATGGATTTAATCTCAAATGCAACTTCTGAAAATGGGTCCAAAGTGCCACTCCCTATTATGGTAACATGCAAGCAAGAAGATGCCAATTCAGCTAAAAGTGACGTGCTTGATTCGGACAGCCCACATTGCACTGATGGGAACCATCCTTCCTCATTTGTGGAGCCTGCAGATTCCTCTCATGCTTTTGAACCAGACCAGTCAGATTTCTCTCAAGATGAAGATGATAGCCTAAGTGAAAACCTTTTGACCCTCCCATGCTTACCAAAGGTGGAAGTAGATGTCTGTTATGATCACCCACCTGAAAACTCTTGTAATTTTGGCTTCCCAGTTGAAGATCAAACCTTCTGTTTCTGGCCCTACTGA 990 0.4343 MASGKLYGGSNMTTLLLQNDRLPCSSEVLESLWVHTTTPASFQGSKSVVDFENVSGSRVTDRPFFQPLEKEENGDEDYETCFHQPGKKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGTLKASYDRLKDDYENLLQENDKLKEEVNSLKNKLIPRDKEKENSDDKSSPDAVNSPHKEPMDLISNATSENGSKVPLPIMVTCKQEDANSAKSDVLDSDSPHCTDGNHPSSFVEPADSSHAFEPDQSDFSQDEDDSLSENLLTLPCLPKVEVDVCYDHPPENSCNFGFPVEDQTFCFWPY. 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01598 329 FunFam Homeobox-leucine zipper protein HAT5 80 144 - -
Seca9g01598 329 Gene3D - 137 184 - -
Seca9g01598 329 ProSitePatterns 'Homeobox' domain signature. 117 140 IPR017970 GO:0000981|GO:0006355
Seca9g01598 329 PRINTS Lambda-repressor HTH signature 122 138 IPR000047 GO:0003677
Seca9g01598 329 PRINTS Lambda-repressor HTH signature 113 122 IPR000047 GO:0003677
Seca9g01598 329 MobiDBLite consensus disorder prediction 237 285 - -
Seca9g01598 329 Gene3D - 90 136 - -
Seca9g01598 329 MobiDBLite consensus disorder prediction 178 202 - -
Seca9g01598 329 SUPERFAMILY Homeodomain-like 75 144 IPR009057 -
Seca9g01598 329 Pfam Homeobox associated leucine zipper 142 183 IPR003106 GO:0006355|GO:0043565
Seca9g01598 329 Coils Coil 141 182 - -
Seca9g01598 329 ProSiteProfiles 'Homeobox' domain profile. 82 142 IPR001356 GO:0003677
Seca9g01598 329 Pfam Homeodomain 87 140 IPR001356 GO:0003677
Seca9g01598 329 MobiDBLite consensus disorder prediction 178 223 - -
Seca9g01598 329 CDD homeodomain 85 143 IPR001356 GO:0003677
Seca9g01598 329 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 69 232 IPR045224 GO:0003700
Seca9g01598 329 SMART HOX_1 84 146 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01598 Seca-Chr9 26815317 26817594 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01598 44 318 Homeobox Transcription Factor Family AT3G01470 38.267 6.96e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca9g01598 Homeodomain 3.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01598 K09338 - adu:107489132 442.195