Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01595 ATGATGGAATTCGAATCCAACCACTTGTGTCAAATAGAGCGATCCTTCGACGACCGTTACTCTCGCCACGCGCGCGAGTCGCTCGACGAATTGCCTGAGAATTTCACCATCACCGACCCTTCCGTTTCGGGCCACCCAATCGTTTTCGCCAGCCTCGGGTTCCTCAAGATGACGGGGTTCACGCGTGACGAGGTTGTTGGGAGGAGAGGAGGGATGTTTCAGGGGCCAGGAACTTGTAGAAGGTCGGTGATGGAGATTCGAGAGGCCGTTCGCCAAGAGAGAGAGGCTCAAGTCGTTTTGTTGAATTATCGCAAGGACGGCACGCCGTTTTGGATGTTGCTTCGTATTTGCCCTGTTTTTAGTGCTCACGGTGGTGCCGTCGTTCACTTTGTCGCCGTTCAGGTGCCACTTCACCGGAAACCCAGGGTTTGTAGGGGAGGAGGAGGGTTTTCCCAGGTGCATGATTTTAGTGTGTACAGATGTTGTCGGAAGGAAGTGTGCTCTGATTCGTTGGCTGAACTTGGTCGTGCTTCTTCCCACAATCAAGTGTTGGAACATGATGTCACAGAATTGGAGAGTGAAGAGCCGTGTGAGGCAAGTGATGAGGAGAAGAGAAGTGCTGTGATTGCCATGGACAACATCTTTTCTGTGCTAACTTACTACAGCGAGTCGACCGGCAGATTGGTGTGTAGAAAGAGATGCAGCATTCCTGACGTGGGTCTTCTTAGCTCATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCACATTTGCCAGACATGCCTATTGTTTACGCCAGTGATGCCTTCTTGAGATTGACAGGTTATGCAAGGGATGAAGTGTTGGGACGCAACTGTAGATTTTTAGGTGGAGCAGATACTGATACCTCAACTTTACATCTGATAAGCGAAAGCATTAAAACTGAACAACCATGCACAGTACGTATTTTGAATTACAGGTCAATACTTTCATTCACTTTTGTCCGAGCTGCCAAAGCTGTGAACTTTATTTATTCGATGTTTACTGAGTCAATTTACTGCAACACTAGCAGGAAGGATAAAAGCTCATTCTGGAATCTTCTTCATATATCACCTGTTCGGAATGCTTCTGGCAAGGTAGCATACTTTGTGGGAATTCAAATAGAAGACGACTATAAAAACGAGGATAGACAGTGTTGGGGCCCTGATATGAGGCACCTTAGTGTGGTTGGTGTAGTCAAGGTTGCAGTGAGGAGTTTATCAATGACTGCCGGATCGTCAAAGTCATAG 1287 0.4685 MMEFESNHLCQIERSFDDRYSRHARESLDELPENFTITDPSVSGHPIVFASLGFLKMTGFTRDEVVGRRGGMFQGPGTCRRSVMEIREAVRQEREAQVVLLNYRKDGTPFWMLLRICPVFSAHGGAVVHFVAVQVPLHRKPRVCRGGGGFSQVHDFSVYRCCRKEVCSDSLAELGRASSHNQVLEHDVTELESEEPCEASDEEKRSAVIAMDNIFSVLTYYSESTGRLVCRKRCSIPDVGLLSSSLIISLGRIKQSFVLTNPHLPDMPIVYASDAFLRLTGYARDEVLGRNCRFLGGADTDTSTLHLISESIKTEQPCTVRILNYRSILSFTFVRAAKAVNFIYSMFTESIYCNTSRKDKSSFWNLLHISPVRNASGKVAYFVGIQIEDDYKNEDRQCWGPDMRHLSVVGVVKVAVRSLSMTAGSSKS. 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01595 428 SMART pac_2 97 140 IPR001610 -
Seca9g01595 428 SMART pac_2 350 392 IPR001610 -
Seca9g01595 428 ProSiteProfiles PAS repeat profile. 269 291 IPR000014 -
Seca9g01595 428 CDD PAS 47 133 IPR000014 -
Seca9g01595 428 NCBIfam PAS domain S-box protein 47 128 IPR000014 -
Seca9g01595 428 CDD PAS 265 295 IPR000014 -
Seca9g01595 428 Gene3D PAS domain 347 418 - -
Seca9g01595 428 Gene3D PAS domain 256 329 - -
Seca9g01595 428 Gene3D PAS domain 34 152 - -
Seca9g01595 428 SUPERFAMILY PYP-like sensor domain (PAS domain) 265 385 IPR035965 -
Seca9g01595 428 PANTHER PROTEIN TWIN LOV 1 357 418 - -
Seca9g01595 428 ProSiteProfiles PAS repeat profile. 20 68 IPR000014 -
Seca9g01595 428 SUPERFAMILY PYP-like sensor domain (PAS domain) 33 132 IPR035965 -
Seca9g01595 428 Pfam PAS domain 45 134 IPR000014 -
Seca9g01595 428 Pfam PAS domain 256 386 IPR000014 -
Seca9g01595 428 FunFam Protein TWIN LOV 1 isoform D 34 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01595 Seca-Chr9 26725348 26730745 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01595 19 388 AGC Kinase Gene Family AT5G58140 30.562 2.99e-51 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01595 - - gmx:100785562 560.451