Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01593 ATGGGGTTGGGTGCTGAAAATGGTAAGGTGGTGGAGTCTTGGGATGTGTGTAAATCAAAAGGGAGGAAGAAAAAGAAGGAAGAGGATGAGGGTGTGGTGGAAGAGGAAGAAACTGGGTGTTGGATTAGGCTGAGGTTCATTGGGAGCTGCATTTCTTCAAGATCCAAGGTTGATAGCTCAGTCAGTGGCACCAGCCCTCATTATGCTGAAAGTAAATCAACTAATGATAGAAGTAGAGACCAACCAACCGCTCCAGTAGTCTCTTCTACAACCACTAGTAATACAGAAAGCAATTCATCCACTTCCAAACTTGAAGAGGAGCTTAAAATTGCTTCCAGGCTGCGAAAATTCTCTTTCAATGATCTTAAGTTGGCAACAAGAAATTTTCGACCTGAGAGTTTTCTTGGTGAAGGTGGTTTTGGTTGTGTTTTCAAGGGGTGGATTGAAGAAAATGGAACTGCTCCAGTGAAACCTGGCACAGGGCTTACTGTTGCTGTAAAAACCCTCAACCATGATGGGTTACAGGGTCATAAAGAATGGCTGGCTGAAGTAAATTTTCTCGGTGATCTAGTTCATCCAAACCTTGTTAAACTGATAGGTTACTGCATTGAAGATGATCAAAGGTTGCTAGTGTACGAGTTCATGCCTCGAGGAAGCTTGGAAAACCACTTATTTAGGAGATCCCTGCCTCTTCCATGGTCCATTAGGATGAAAATTGCACTAGGAGCTGCTAAAGGACTTGCTTTTCTTCATGAAGAAGCTGAACGACCAGTAATATATAGGGATTTTAAAACTTCAAATATACTATTAGATGCAGACTACAATGCCAAGCTCTCAGACTTTGGCCTTGCTAAAGATGGCCCAGAAGGTGATAAAACTCATGTGTCTACTCGTGTGATGGGAACCTATGGTTATGCAGCACCAGAATATGTCATGACAGGCCATCTTACATCAAAAAGTGACGTGTACAGTTTTGGAGTGGTACTACTTGAGATGTTGACTGGCAGAAGATCTATGGACAAACACCGACCCAATGGTGAGCACAACCTTGTGGAATGGGCTCGACCGCATCTAGGAGAGAGGAGAAGGTTCTACAGGTTGATAGACCCTCGCCTGGAAGGTCACTTCTCCATAAAAGGAGCTCAGAAAGCTGCCCAACTAGCTGCTCACTGCATTAGTAGAGATCCAAAAGCCAGACCCCTAATGAGTGAAGTAGTAGAAGCTTTAAAGCCTCTGCCAAATCTTAAGGACATGGCAAGCTCTTCATATTATTTCCAGACAATGCAAGCTGATCGCTTTGGAGCAAGCCCAAATACCAGAAATGGTCAGACACAAGGAGCATTGCTCACCCGGAATGGACAGCAGCGAAGGAGCCTTTCAATACCAAATGGTACTCATGCATCTCCTTATCACCATCAGTATACCCAACAATCACCAAAACCCAATGGAAAAACTTAG 1458 0.439 MGLGAENGKVVESWDVCKSKGRKKKKEEDEGVVEEEETGCWIRLRFIGSCISSRSKVDSSVSGTSPHYAESKSTNDRSRDQPTAPVVSSTTTSNTESNSSTSKLEEELKIASRLRKFSFNDLKLATRNFRPESFLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLVHPNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKHRPNGEHNLVEWARPHLGERRRFYRLIDPRLEGHFSIKGAQKAAQLAAHCISRDPKARPLMSEVVEALKPLPNLKDMASSSYYFQTMQADRFGASPNTRNGQTQGALLTRNGQQRRSLSIPNGTHASPYHHQYTQQSPKPNGKT. 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01593 485 CDD STKc_IRAK 135 412 - -
Seca9g01593 485 Gene3D Phosphorylase Kinase; domain 1 88 214 - -
Seca9g01593 485 PANTHER OS01G0588500 PROTEIN-RELATED 93 412 - -
Seca9g01593 485 FunFam Serine/threonine-protein kinase BIK1 96 214 - -
Seca9g01593 485 MobiDBLite consensus disorder prediction 14 36 - -
Seca9g01593 485 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Seca9g01593 485 FunFam Probable serine/threonine-protein kinase PBL8 215 430 - -
Seca9g01593 485 Pfam Protein tyrosine and serine/threonine kinase 134 409 IPR001245 GO:0004672|GO:0006468
Seca9g01593 485 ProSitePatterns Protein kinases ATP-binding region signature. 135 167 IPR017441 GO:0005524
Seca9g01593 485 ProSiteProfiles Protein kinase domain profile. 129 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g01593 485 MobiDBLite consensus disorder prediction 450 485 - -
Seca9g01593 485 MobiDBLite consensus disorder prediction 78 101 - -
Seca9g01593 485 MobiDBLite consensus disorder prediction 55 71 - -
Seca9g01593 485 SUPERFAMILY Protein kinase-like (PK-like) 107 409 IPR011009 -
Seca9g01593 485 MobiDBLite consensus disorder prediction 55 104 - -
Seca9g01593 485 Gene3D Transferase(Phosphotransferase) domain 1 215 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01593 Seca-Chr9 26700850 26704936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01593 76 409 Glycoside Hydrolase AT3G07070 53.550 3.46e-117 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca9g01593 PK_Tyr_Ser-Thr 2.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01593 - - gmx:100787151 859.366