Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01588 ATGGCAAAATTGTGCCATTTCTTCTTTTTAGCATGTTTGGTAGTCATCATACCTACCTTGTATGCCAATGTCAAAGAGGAAAGCGCGTACTGGCAACAGCAGATGAAAGTTCTTGATGATTCATATTGGAAAGAAAAAGCAGTACTTGCTGAAAAAACAAACCAAGAAGCTTATAATCCTGACCCTTATTCCCTCTCCGGCAACCTCACTTCTAGTGTTAGCGAAATGATAGTTGGTGGCAAAAATGGAAGAAGAAACCTGGGGGCAGGTAAAAGAGCTGGACCATGTATGGCAACAAACCCCATTGATAGGTGTTGGAGGTGTGACCCTAATTGGGCAAACAACCGCAAGAAGCTTGCAGATTGTGTGCAGGGTTTTGGAAGAAACACTGTTGGAGGAAAGTATGGTCCAATCTATGTGGTAACTGATCCATCAGATAATGACATGCTCAATCCAAAAGCAGGTACCCTTAGGCATGCAGTTACAAGAAATGGACCCTTATGGATTATCTTTGCCCGTAGCATGAACATTAGGCTCAACCAGGAGCTCATAATGACAAGTAACAAGACCATTGATGGGAGAGGAGCTGATGTTTACATTGCTAATGGGGCTGGTATTACGATCCAGTTCATTAACAATGTGATCATTCATGGGATTAAAATCTTTGACATTCAGGTTGGCACTGGTGGTCTTATTAGAGATTCTGAGGACCACTTTGGTCTAAGGACTATGAGTGATGGTGATGGAATTTCCATCTTTGGCTCTAGCAATGTTTGGATTGATCATGTTTCCATGAGAAACTGCAGAGATGGACTCATAGATGCCATTATGGGATCCACTGCTATTACCATCTCTAATGGCCATTTCACAGATCACAACGAGGTGATGTTGTTTGGTGCCAGTGACAGCTATGATGGTGATAAGAGAATGCAGATCACACTAGCATTCAACCACTTCGGTAAGAGATTAGTCCAAAGGATGCCAAGGTGCAGATGGGGTTTTGTCCATGTGGTTAACAATGACTACACTCATTGGGAAATGTATGCCATTGGTGGTAGCAAGCACCCTACCATTATTAGTGAGGGTAACCGATTCATAGCCCCTGACAACAACTTTGCTAAAGAGATAACAAAGAGGGAATACTCACCAGAGCTAGAATGGAAAAACTGGCAATGGAGATCAATTGATGATGCTTATATGAATGGAGCATTTTTCAGACAAGCTGGGCCTGAACTGACTAACAGACCATTTTCAAGGCAGGACATGATAAAAGCTAAGCCTGGATCATATGTGGGAAGGCTTACTCGCTATGCTGGCAGTCTTAGATGCGTAGTGGGAAAGCCTTGTTAA 1350 0.4274 MAKLCHFFFLACLVVIIPTLYANVKEESAYWQQQMKVLDDSYWKEKAVLAEKTNQEAYNPDPYSLSGNLTSSVSEMIVGGKNGRRNLGAGKRAGPCMATNPIDRCWRCDPNWANNRKKLADCVQGFGRNTVGGKYGPIYVVTDPSDNDMLNPKAGTLRHAVTRNGPLWIIFARSMNIRLNQELIMTSNKTIDGRGADVYIANGAGITIQFINNVIIHGIKIFDIQVGTGGLIRDSEDHFGLRTMSDGDGISIFGSSNVWIDHVSMRNCRDGLIDAIMGSTAITISNGHFTDHNEVMLFGASDSYDGDKRMQITLAFNHFGKRLVQRMPRCRWGFVHVVNNDYTHWEMYAIGGSKHPTIISEGNRFIAPDNNFAKEITKREYSPELEWKNWQWRSIDDAYMNGAFFRQAGPELTNRPFSRQDMIKAKPGSYVGRLTRYAGSLRCVVGKPC. 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01588 449 Pfam Pectate lyase, N terminus 40 87 IPR007524 GO:0030570
Seca9g01588 449 PRINTS Pollen allergen Amb family signature 390 414 IPR018082 -
Seca9g01588 449 PRINTS Pollen allergen Amb family signature 420 443 IPR018082 -
Seca9g01588 449 PRINTS Pollen allergen Amb family signature 146 171 IPR018082 -
Seca9g01588 449 PRINTS Pollen allergen Amb family signature 246 267 IPR018082 -
Seca9g01588 449 PRINTS Pollen allergen Amb family signature 122 139 IPR018082 -
Seca9g01588 449 PRINTS Pollen allergen Amb family signature 182 198 IPR018082 -
Seca9g01588 449 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Seca9g01588 449 PRINTS Pollen allergen Amb family signature 348 367 IPR018082 -
Seca9g01588 449 Gene3D - 99 442 IPR012334 -
Seca9g01588 449 Pfam Pectate lyase 183 365 IPR002022 -
Seca9g01588 449 SMART amb_all 174 371 IPR002022 -
Seca9g01588 449 PANTHER PECTATE LYASE 18-RELATED 50 447 IPR045032 GO:0030570
Seca9g01588 449 SUPERFAMILY Pectin lyase-like 100 440 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01588 Seca-Chr9 26661663 26664468 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01588 8 449 Polysaccharide Lyase AT1G14420 58.425 0.0 534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01588 K01728 - gmx:100796307 781.556