Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01584 ATGTTGCAGCTACACTCCATTACCACTAAGCCAGTCCCAGTCCCAAGCCACTGTTTCGTCACTCCAAAGTCCATCTCTTTAAGGGGTGCTAGTGCTTCTACACCCACACCCACACCTACCTCACTCTCTGTCAAATGCCGCCACCCTGAGCTCTTCCAACCCACACCATTCCCCTCACCACCACAACGCCCTCCGCCTCCGTCTCCGTCTCCGCCTCCGCCTCCGCCTCCTCCACCTCATCATCCAGTTGGAGATTTGCCACCCAGGGTTTTTGTGGATCACTCCCTTTACAAAGGAAAGGGTGTACTCACTGTGTCTCCTAGACCTCCGGAATTTACTACATTGAATTCTGGGGCATTCAAAATATCTAGGGAAGGTTGTGTGCAGCTCCAGTTTGCTCCTGCAGTTGGTATTCTCGAAATTGACAGCAGGCTCCAATATGATTGGAAAAAAAAGCAGGTATTCTCGCTATCAGTGAATGAAATGGGAATTCTTAGTGGCCTTGGTACAGAGGACTCATGTGAATTTTTTCAACATTCTTTTAAGGAAAAAAGTGATGAAGGTAAACTGAGTAAAGTTTTGAAGGTGGAGCCGCTTCTGGATTATTCTGGTCACATGTTTCACCTAGGTGTTGTTCAAAAGAAGGTCGAGAATGTGGATGAAAGTATCTTTATTCCTGTTACAAGAGCAGAGTTAGCAGTTTTCAGATCGATTTTCAATTTTATCACGCCATACCTTCTAGGTTGGAATGCCTTTGCAAACTCCATAAAGCCAGAGGTATATAGCCGAGTGAATAATGCTAACTCAAGATACAGAGTAGATGAATAG 828 0.4565 MLQLHSITTKPVPVPSHCFVTPKSISLRGASASTPTPTPTSLSVKCRHPELFQPTPFPSPPQRPPPPSPSPPPPPPPPPHHPVGDLPPRVFVDHSLYKGKGVLTVSPRPPEFTTLNSGAFKISREGCVQLQFAPAVGILEIDSRLQYDWKKKQVFSLSVNEMGILSGLGTEDSCEFFQHSFKEKSDEGKLSKVLKVEPLLDYSGHMFHLGVVQKKVENVDESIFIPVTRAELAVFRSIFNFITPYLLGWNAFANSIKPEVYSRVNNANSRYRVDE. 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01584 275 SUPERFAMILY ssDNA-binding transcriptional regulator domain 88 271 IPR009044 GO:0003677|GO:0006355
Seca9g01584 275 MobiDBLite consensus disorder prediction 53 85 - -
Seca9g01584 275 MobiDBLite consensus disorder prediction 50 88 - -
Seca9g01584 275 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 78 269 IPR013742 GO:0003697|GO:0006355|GO:0006952
Seca9g01584 275 Gene3D Transcriptional Coactivator Pc4; Chain A 84 268 IPR009044 GO:0003677|GO:0006355
Seca9g01584 275 Pfam Whirly transcription factor 96 238 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01584 Seca-Chr9 26638417 26642379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01584 4 274 Whirly Transcription Factor Family AT1G14410 50.183 9.91e-81 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Seca9g01584 Whirly 2.4e-43 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01584 K26559 - pcin:129310571 260.766