Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01569 ATGGCTTTTTTCCAAGCAAACTTCATGCTACAAACCCCTCACCATAATGATCATCAACCTCCACCTTCACTCAACTCAATTCTACCCACGTGTACACCTCAAGATTATCATGGGGGACCATCCTTTCTAGGGAAGAGATCTATGTCATTTTCATCAGGAATTGAACTTGGAGAAGAAGCTAATGCTGAGGAAGATTTGTCTGATGATGGATCACAAGCAGGGGAGAAAAAAAGGAGGCTTAACATGGAACAAGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGAAATAAGCTTGAACCAGAGAGGAAAATGCAGCTTGCAAGAGCTCTTGGATTGCAGCCTAGACAGATTGCTATATGGTTCCAAAACAGAAGGGCTAGGTGGAAGACCAAGCAGTTGGAGAAAGACTATGATGTCCTTAAAAAACAATATGAAGCTATTAAGTCAGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAGGCAGAGATAATTTTATTGTTGCAGATATTGGCACTGAAAAATAGAGAGCCAACTGAATCTATCAACCTTAATAAAGAAACAGAAGGGTCCTGCAGCAACAGAAGTGAGAACAGCTCAGACAACATCAAGTTGGATATCTCAAGGACACCAGCTATAGATAGTCCTTTATCTACACATCACCACAGCAGAACCTTCTTTCCACCCTCTGCTAGGCCTACAACAGTTGCTCAGCTTTTTCAAACTTCCTCAAGGCCAGATCACCAATGCCAAAAGATTGATCAACTGGTCAAAGAAGAAACCTTAAGCAGCATGTTTTGTGGCATGGATCAGGATGATCAATCTGGGTTTTGGCCATGGTTGGAGCAGCATAATTTCAATTGA 867 0.4164 MAFFQANFMLQTPHHNDHQPPPSLNSILPTCTPQDYHGGPSFLGKRSMSFSSGIELGEEANAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKKQYEAIKSDNDALQAQNQKLQAEIILLLQILALKNREPTESINLNKETEGSCSNRSENSSDNIKLDISRTPAIDSPLSTHHHSRTFFPPSARPTTVAQLFQTSSRPDHQCQKIDQLVKEETLSSMFCGMDQDDQSGFWPWLEQHNFN. 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01569 288 PRINTS Lambda-repressor HTH signature 111 127 IPR000047 GO:0003677
Seca9g01569 288 PRINTS Lambda-repressor HTH signature 102 111 IPR000047 GO:0003677
Seca9g01569 288 CDD homeodomain 76 132 IPR001356 GO:0003677
Seca9g01569 288 MobiDBLite consensus disorder prediction 183 205 - -
Seca9g01569 288 FunFam Homeobox-leucine zipper protein ATHB-13 68 135 - -
Seca9g01569 288 Pfam Homeodomain 76 129 IPR001356 GO:0003677
Seca9g01569 288 ProSitePatterns 'Homeobox' domain signature. 106 129 IPR017970 GO:0000981|GO:0006355
Seca9g01569 288 SMART HOX_1 74 135 IPR001356 GO:0003677
Seca9g01569 288 SUPERFAMILY Homeodomain-like 67 133 IPR009057 -
Seca9g01569 288 Pfam Homeobox associated leucine zipper 131 168 IPR003106 GO:0006355|GO:0043565
Seca9g01569 288 MobiDBLite consensus disorder prediction 59 78 - -
Seca9g01569 288 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 53 218 IPR045224 GO:0003700
Seca9g01569 288 Coils Coil 123 171 - -
Seca9g01569 288 Gene3D - 68 137 - -
Seca9g01569 288 ProSiteProfiles 'Homeobox' domain profile. 71 131 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01569 Seca-Chr9 26462816 26464630 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01569 1 288 Homeobox Transcription Factor Family AT1G69780 63.036 9.52e-119 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca9g01569 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01569 K09338 - gmx:100814080 487.263