Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01567 ATGTCTAGCAGAAGATCTCGTTCGAGACAATCTGGTGGTTCCGCTGAGATAAGTGATGCTCAAATCACTGATCTCGTCTCCAAGTTACAACAACTTATCCCTGAGCTTCGTGCAAGGCGCTCCGACAAGGTTTCAGCTGCGAAAGTGTTGCAGGAGACTTGCAACTACATTAAGAACTTGCACAGAGAGGTGGATGATTTAAGTGACCGATTATCAGAGCTTTTGGCTACCACTGACTCCAACAGTGCTCAAGCAGCCATTATTAGGAGCTTACTTATGTAA 282 0.4539 MSSRRSRSRQSGGSAEISDAQITDLVSKLQQLIPELRARRSDKVSAAKVLQETCNYIKNLHREVDDLSDRLSELLATTDSNSAQAAIIRSLLM. 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01567 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 82 IPR036638 GO:0046983
Seca9g01567 93 CDD bHLH_AtPRE_like 17 77 - -
Seca9g01567 93 PANTHER TRANSCRIPTION FACTOR PRE 1 93 IPR044293 GO:0006355|GO:0040008|GO:0046983
Seca9g01567 93 Coils Coil 57 77 - -
Seca9g01567 93 Gene3D - 20 89 IPR036638 GO:0046983
Seca9g01567 93 Pfam Helix-loop-helix DNA-binding domain 21 60 IPR011598 GO:0046983
Seca9g01567 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Seca9g01567 93 FunFam Transcription factor ILI6 7 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01567 Seca-Chr9 26425030 26425955 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01567 1 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 68.085 1.63e-35 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca9g01567 HLH 8.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01567 - - gmx:100804830 161.77