Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01566 ATGTGGATCCGAGGATTCAGTGTTTTGATCTTGGGTTGCATTTTGTTGTCCTTGATATCTGTGATTTCTGGTCTGGAACCCGAACTGGGATGGACCCGCGTTGTCTTTCAGACAAATTATGGGGATATTGAATTTGGTTTCTTTCCAACTGTTGCACCCAAAACTGTTGAGCACATTTTTAAACTTGTGCGACTTGGAGGCTATAACACTAATCATTTCTTTCGGGTGGACAAGGGATTTGTTGCCCAAGTAGCAGATGTTAAGGGTGGAAGATCTGCTCCCATGAATGAGGAACAAAGAAGAGAAGCTGAAAAGACTGTTGTTGGTGAATTTAGCGAAGTCAAACATGTTCGGGGTATTCTTTCTATGGGAAGGTATGATGATCCAGACAGTGGTTCATCCTCATTTTCAATACTACTTGGAAATGCTCCTCATCTTGATGGCAAGTATGCAATATTTGGAAGAGTTACTAAAGGCGACGATACATTGACAAAGCTTGAGCAACTACCTACCCGTAGAGAGGGTATATTTGTAATGGTATACTTGAAAATCTTATCCATCTCAGTGCATTGTACTTTTTATCCCTTCATTAAATGTTCAATCATGGATCATATACATAAATTTATTTTTCTTGGTTTTTCCTTGCAACTACTGTTTTATTCTTTTACTTTGAGGAGAAGCCAGGGGTAA 690 0.3928 MWIRGFSVLILGCILLSLISVISGLEPELGWTRVVFQTNYGDIEFGFFPTVAPKTVEHIFKLVRLGGYNTNHFFRVDKGFVAQVADVKGGRSAPMNEEQRREAEKTVVGEFSEVKHVRGILSMGRYDDPDSGSSSFSILLGNAPHLDGKYAIFGRVTKGDDTLTKLEQLPTRREGIFVMVYLKILSISVHCTFYPFIKCSIMDHIHKFIFLGFSLQLLFYSFTLRRSQG. 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01566 229 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 148 163 IPR002130 GO:0000413|GO:0003755
Seca9g01566 229 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 134 IPR002130 GO:0000413|GO:0003755
Seca9g01566 229 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 47 62 IPR002130 GO:0000413|GO:0003755
Seca9g01566 229 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 73 85 IPR002130 GO:0000413|GO:0003755
Seca9g01566 229 CDD cyclophilin 35 186 - -
Seca9g01566 229 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 34 173 IPR002130 GO:0000413|GO:0003755
Seca9g01566 229 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP23 14 185 IPR044233 -
Seca9g01566 229 SUPERFAMILY Cyclophilin-like 33 197 IPR029000 -
Seca9g01566 229 Gene3D - 26 193 IPR029000 -
Seca9g01566 229 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 35 189 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01566 Seca-Chr9 26402767 26408004 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01566 34 194 U-box Gene Family AT5G67530 30.769 4.83e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01566 - - gmx:100819238 312.768