Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01537 ATGGAAGAGAGAAATGATGCTGAGAAACTTGATGAAGTTATGCTACCAGGCTTTAGATTTCATCCAACTGATGAGGAGCTTGTTGGGTTTTACCTTAAGAGAAAGATTCAGCAACGGCCTCTGTCTATTGAGCTCATCAAGCAGCTTGATATCTATAAATATGATCCTTGGGATCTTCCAAAGTTGGCCACTACAGGAGAGAAAGAGTGGTACTTTTACTGTCCCAGAGACAGAAAATATAGAAACAGTGCAAGGCCTAATAGGGTAACTGGAGCTGGGTTCTGGAAGGCTACAGGCACTGATAGGCCTATCTACTCCTCAGAAGGTTCCAAGTGTATTGGCCTGAAGAAATCCCTAGTCTTTTACAAAGGTAGAGCTGCCAAAGGAGTCAAAACTGACTGGATGATGCATGAGTTCAGGCTACCTTCTCTCAAAGACTCAATGTCTCCAAAGAAGTACATAGACAAGACCATTCCAGTTAATGTGAGTAAAAGTTATCTAAACCTCATTTCTTTAGTAAAATTAGAATCTTGGGCAATCTGCAGGATATTCAAGAAAACCAATTCTACAGCTCAAAGAGCTCTGTCTCACTCTTGGGTCTCTTCCCTACCTGAAACAACAACCTCTGATATGCTAACCAAAGATCAAGACATTACCCAGTTTTGTTCAGCCAACATGTCATTAACAAAGAAAACTAGCTTACCAAGCCAGTTCTGTAGTGCTAACAACAATGACACCCAAAACTTAACCTCTAATAGCAGTACTCTTTGTCCTTTAGATGTTACCTCTTATAAATCCATTATTAACCCATTGCTACACAAAGCCTTTGATCATTTACCCATTTCAAATGGAGATCTTAATACAAGCTTGGTATTCTCATCTCCACTTGAAACATCTAATACTAATGCCAAATCTACAATGGATGTTTCTTCCATGTTGTTGAATATGTCATCCTCCATGCTTGGAGATTTTAGCAAGACTACTTGTTCTGAGGATACAACTACAGCAAGCTTTAATGGTGGGTTGCAAGAGCACTGTAATGACTACTACTCAATACCATTTCTACGTGAGATGCAAGCCACATTTGGGAACCAATATGATAATGCATTGGTAAAGGTTCCTAATGTGAATGTGCCTCGTGTTGATGAGCAAGAGTTGGAGACAGTAGCACGATCCATTGGGTTCCCATTGAGTAATATGCATTTCAATATTGGCGATGCATGGAAGTCAAATCTGCTTTGGGATACTTCCTCTTGTCCTTGTGATGTTCCCTCTAGTTATAGTTATTCCACAACCAAGTGCTATACTTAG 1311 0.3997 MEERNDAEKLDEVMLPGFRFHPTDEELVGFYLKRKIQQRPLSIELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLKDSMSPKKYIDKTIPVNVSKSYLNLISLVKLESWAICRIFKKTNSTAQRALSHSWVSSLPETTTSDMLTKDQDITQFCSANMSLTKKTSLPSQFCSANNNDTQNLTSNSSTLCPLDVTSYKSIINPLLHKAFDHLPISNGDLNTSLVFSSPLETSNTNAKSTMDVSSMLLNMSSSMLGDFSKTTCSEDTTTASFNGGLQEHCNDYYSIPFLREMQATFGNQYDNALVKVPNVNVPRVDEQELETVARSIGFPLSNMHFNIGDAWKSNLLWDTSSCPCDVPSSYSYSTTKCYT. 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01537 436 Pfam No apical meristem (NAM) protein 16 141 IPR003441 GO:0003677|GO:0006355
Seca9g01537 436 SUPERFAMILY NAC domain 13 186 IPR036093 GO:0003677|GO:0006355
Seca9g01537 436 Gene3D NAC domain 23 191 IPR036093 GO:0003677|GO:0006355
Seca9g01537 436 ProSiteProfiles NAC domain profile. 14 186 IPR003441 GO:0003677|GO:0006355
Seca9g01537 436 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 250 - -
Seca9g01537 436 FunFam NAC domain-containing protein 35 23 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01537 Seca-Chr9 26013904 26015919 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01537 1 361 NAC Transcription Factor Family AT1G26870 52.255 1.51e-109 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca9g01537 NAM 7.8e-37 No_clan