Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca9g01534 | ATGGTGGGGATTTATGGACTCGGAGGAATTGGTAAAACAACACTTGCATGTGCTGTATTTAACTGCATTGCTGATCAATTTGAGAGTCTCTGTTTTCTTGCTGATATCAGAGAAAATTCAATGAAACAAGGGCTGGTACACCTTCAAGAGACACTTCTTTTTGAATTGGTAGGGGAGAAGGATGTTAAGTTGTGGAATGTAAATAAAGGTATTCCAATAATTAAAAGTAGGCTCTGCCAAAAAAAAATTCTGTTGATTCTCGATGATGTTGACAGATTGGAGCAACTAAAAGCACTTGCTGGTGGACTTGATTGGTTTGGTTCTGGCAGCAGAATTATGATAACAACAAGGGATAAGCATTTGCTACATGTTTATGGTGTTGAAAGAATTTATGAAGTAGAAGGTTTAAATCATAAAGAAGCCCTTGAATTGTTTAGTTGGAATGCTTTCCAAAGAAAAGAAGTTAATCCTAGTTATGTGGACATTTCAAAGAGAGTAATACTTTATTCTAATGGCCTTCCATTGTCTCTTGAAGTAATAGGTTCTGACTTATTTGGTAAAACAGAGTTGCAATGGAAATCAGCATTAGATACTTATGAAAGAATTCCTCATGAAAATATTCAGGAAATCCTAAGAGTGAGCTATGATGGCTTAAAGGAATTTGAGAAGGAAATCTTTTTAGACATGGCTTGCTTCTTTAAAGGATACGAACCAAGTGATGTAATAAACATACTAAGTAGTGGTCGTGGCTTAGCCCCATACTATGCTGTCCAGGTGTTGGTTGATAAGTGTCTGATAAAAATTGTTCAATGTCGTGTGAGAATGCATAACCTGATTGAGGATATGGGTAGAGAAATTGTACGACAAGAATCACCATCAAAGCCAAGTGAACACGGTAGATTGTGGTTCTCTAAAATATTCTTCATGGGTTCTGATAAAACAGAGATAATCAAGCTACACTTGCGCAAAGATAAAGAAGTGCAATGGGATGGAAATGCGTTAAAGAAGATGGAAAACCTGAAAATACTGGTCATAGAAAATGCTCGCTTTTCAAGAGGACCTAATCATCTCCCAAAAAGTTTAAGAGTGCTAAGATGGTGTGGATATCCTGAATCATCGCTGCCACCTCATTTTGATCCAAAGAAACTTATCATGCTGGATTTGTCCATGAGTTTCTTCACATTCAAAAATCAACCGATCATGAAATTTAAGTCTTTAAGGGAAATGACGCTAAGCGGTTGCCAATCATTGCAACAAGTGCCTGATATGTCTGGAGCACCAAATTTGAAGAAATTGAATCTTGATTACTGCAAGAATTTAGTTGAAGTTCATGATTCCGTTGGATTCCTGAACAAACTTGAAGATTTGAATCTAAATCACTGCACCAGTCTCAGTGTTCTTCCTCATGCCATCAACCTAATTTCTCTTAAAACCCTGTCTCTTAGGAAATGTGTAAGTCTCAAGAGTTTTCCAGAAATTTTAGGGAAGATGGAAAACATAAGGTACCTTAGTTTGAATGATAGCAGTATAAGAAAATTGCCCTTTTCAATTGGAAATCTTGTTGGACTTACAGTCCTAACTCTGGATAGATGCAACATGCTACTTGAACTACCTAGTAGTATTTTCATGTTGCCGAACCTTGAGACCTTCCAAGCCAACTATTGTGAAGTGTTGTCACTTGTGTCAAGCATATTGAAGGTGCCACTTGCTATGGCTACCATGAAAAAGTCAACCTCCTCCTGTTTTACCTGTCAATGGGCTTATGATGTTTTTCTCAGTTTCCGAGGAGAGGATACTAGAACTGGTATCACTCGAAACCTTTACAACGCTCTGCGTGAAAAGGGAATCAACGCCTTCATGGATGATCAAAAGCTCAGTAAAGGAGAACAAATCACACCAGCTCTCGTGAAGGCAATCCAACAATCTAGGATTGCAATTGTGATCTTTTCAGAAAACTATGCATCATCCACTTTTTGTTTGGAAGAACTCGTGATGATCATGAAGTGCATAAAACACAAGGGCAGGTTGGATTGGCCATTATTTTATCGTATGGACCCTTCTGATGTGCGCCATCAGAAAGGTAGTTACGCAGTAGCACTAGCCAAGTGTGAAAGAAAAACCATTAACAAGGTGAAGGTCGAAAGATGGAGGTTAGCTTTGCAAGAAGCAGCTAATCTGTACGAGTATGAGTTCATTAGGAAGATCATTCAAGAGGTCTCTAAAAGGGTTAATCGTATCCCTTTATATGTAGCTAATTACCCAGTTGGGTTAGAGTCTAGTGCAAGAACTAAACTCACTTCTAGATGTTGA | 2310 | 0.3814 | MVGIYGLGGIGKTTLACAVFNCIADQFESLCFLADIRENSMKQGLVHLQETLLFELVGEKDVKLWNVNKGIPIIKSRLCQKKILLILDDVDRLEQLKALAGGLDWFGSGSRIMITTRDKHLLHVYGVERIYEVEGLNHKEALELFSWNAFQRKEVNPSYVDISKRVILYSNGLPLSLEVIGSDLFGKTELQWKSALDTYERIPHENIQEILRVSYDGLKEFEKEIFLDMACFFKGYEPSDVINILSSGRGLAPYYAVQVLVDKCLIKIVQCRVRMHNLIEDMGREIVRQESPSKPSEHGRLWFSKIFFMGSDKTEIIKLHLRKDKEVQWDGNALKKMENLKILVIENARFSRGPNHLPKSLRVLRWCGYPESSLPPHFDPKKLIMLDLSMSFFTFKNQPIMKFKSLREMTLSGCQSLQQVPDMSGAPNLKKLNLDYCKNLVEVHDSVGFLNKLEDLNLNHCTSLSVLPHAINLISLKTLSLRKCVSLKSFPEILGKMENIRYLSLNDSSIRKLPFSIGNLVGLTVLTLDRCNMLLELPSSIFMLPNLETFQANYCEVLSLVSSILKVPLAMATMKKSTSSCFTCQWAYDVFLSFRGEDTRTGITRNLYNALREKGINAFMDDQKLSKGEQITPALVKAIQQSRIAIVIFSENYASSTFCLEELVMIMKCIKHKGRLDWPLFYRMDPSDVRHQKGSYAVALAKCERKTINKVKVERWRLALQEAANLYEYEFIRKIIQEVSKRVNRIPLYVANYPVGLESSARTKLTSRC. | 770 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca9g01534 | 769 | FunFam | Disease resistance protein (TIR-NBS-LRR class) | 584 | 749 | - | - | |
| Seca9g01534 | 769 | Gene3D | Ribonuclease Inhibitor | 318 | 471 | IPR032675 | - | |
| Seca9g01534 | 769 | Gene3D | Ribonuclease Inhibitor | 472 | 576 | IPR032675 | - | |
| Seca9g01534 | 769 | SUPERFAMILY | "Winged helix" DNA-binding domain | 206 | 305 | IPR036390 | - | |
| Seca9g01534 | 769 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING PROTEIN | 1 | 492 | IPR044974 | GO:0006952 | |
| Seca9g01534 | 769 | Gene3D | - | 582 | 750 | IPR035897 | - | |
| Seca9g01534 | 769 | Pfam | TIR domain | 587 | 745 | IPR000157 | GO:0007165 | |
| Seca9g01534 | 769 | PRINTS | Disease resistance protein signature | 170 | 184 | - | - | |
| Seca9g01534 | 769 | PRINTS | Disease resistance protein signature | 1 | 16 | - | - | |
| Seca9g01534 | 769 | PRINTS | Disease resistance protein signature | 77 | 91 | - | - | |
| Seca9g01534 | 769 | PRINTS | Disease resistance protein signature | 401 | 417 | - | - | |
| Seca9g01534 | 769 | Gene3D | - | 135 | 219 | IPR042197 | - | |
| Seca9g01534 | 769 | SMART | till_3 | 587 | 726 | IPR000157 | GO:0007165 | |
| Seca9g01534 | 769 | SUPERFAMILY | L domain-like | 317 | 563 | - | - | |
| Seca9g01534 | 769 | ProSiteProfiles | TIR domain profile. | 586 | 743 | IPR000157 | GO:0007165 | |
| Seca9g01534 | 769 | Gene3D | - | 1 | 128 | IPR027417 | - | |
| Seca9g01534 | 769 | Pfam | NB-ARC domain | 1 | 216 | IPR002182 | GO:0043531 | |
| Seca9g01534 | 769 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 2 | 228 | IPR027417 | - | |
| Seca9g01534 | 769 | SUPERFAMILY | Toll/Interleukin receptor TIR domain | 578 | 727 | IPR035897 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca9g01534 | Seca-Chr9 | 25995711 | 26006421 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca9g01534 | 2 | 517 | WRKY Transcription Factor Family | AT5G45050 | 34.004 | 8.86e-72 | 253 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca9g01534 | - | - | gmx:100814790 | 814.298 |