Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01530 ATGGACATGACCCCTACCCACACCCACTCCTTAGAAACAGACACTCGAACCCCATCACCGACTCAACACTCATCTCTCACCAATGGTTCCCTCAAACGCCACCGCCAACCCACCGCCACCGCCGCATCCGCGGTGGTTTCCTACAAGGAGTGCCTCAAGAATCATGCAGCCAGTTTAGGTGGTCACGCCCTTGATGGCTGCGGCGAGTTCATGCCTTCTTCTTCCTGTTCCACCGAACCCCGCTCGTTAACATGCGCCGCGTGTGGATGTCACCGTAACTTCCACCGCCGTGACACACAAGATTTCTCCAATCCCCACTTCATCAGCTTCTACCCCTCTCACCATGGGCCCAGCCTGAGCACCAGCCCAAGTCGAAGCCCAAGCCCGAGCCTGAGCCCATCCCCACCACCGCTGTCTCAACATTTCCCACCCTCTTACAACCGCCACGCGTCAGCACCGCACGTGCTCTTATCCCTCGGGAATCCCGATGAGGGTCACGTGACCAGGACTGAAGAGAACCTAAGTGGGAAAAAGAGGCACAGGACCAAGTTCAGTCAAGAGCAGAAGGAGAAGATGCTGGGATTCTCTGAGAAGTTGGGTTGGAGAATGCCGAAAGGAGGAGATGAAGGAATGATGGAGGAGTTCTGCAATAGCATTGGTGTTTCCAGAGAGGTTTTCAAGGTTTGGATGCACAATAATAAGAACGCGTTCAAGAAGAGGTCTTCTGAAACTGGAAATGATGCTCCATCTCCTGATGAAAAGATCAACAACGGTAATGGCAATTGTGGTGATGGTAGAGATGGAATTCATAGTGATATTAACAAGTCTCACAACACAAATGGCAGCAACAATGGCATTCATAGAAATTAA 870 0.5184 MDMTPTHTHSLETDTRTPSPTQHSSLTNGSLKRHRQPTATAASAVVSYKECLKNHAASLGGHALDGCGEFMPSSSCSTEPRSLTCAACGCHRNFHRRDTQDFSNPHFISFYPSHHGPSLSTSPSRSPSPSLSPSPPPLSQHFPPSYNRHASAPHVLLSLGNPDEGHVTRTEENLSGKKRHRTKFSQEQKEKMLGFSEKLGWRMPKGGDEGMMEEFCNSIGVSREVFKVWMHNNKNAFKKRSSETGNDAPSPDEKINNGNGNCGDGRDGIHSDINKSHNTNGSNNGIHRN. 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01530 289 NCBIfam homeobox domain, ZF-HD class 177 235 IPR006455 -
Seca9g01530 289 MobiDBLite consensus disorder prediction 165 188 - -
Seca9g01530 289 FunFam Zinc-finger homeodomain protein 2 165 239 - -
Seca9g01530 289 MobiDBLite consensus disorder prediction 128 142 - -
Seca9g01530 289 Pfam ZF-HD protein dimerisation region 46 99 IPR006456 -
Seca9g01530 289 MobiDBLite consensus disorder prediction 274 289 - -
Seca9g01530 289 SUPERFAMILY Homeodomain-like 167 239 IPR009057 -
Seca9g01530 289 MobiDBLite consensus disorder prediction 1 38 - -
Seca9g01530 289 MobiDBLite consensus disorder prediction 114 188 - -
Seca9g01530 289 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 48 98 IPR006456 -
Seca9g01530 289 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 48 98 IPR006456 -
Seca9g01530 289 Gene3D - 164 239 - -
Seca9g01530 289 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 19 236 - -
Seca9g01530 289 MobiDBLite consensus disorder prediction 237 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01530 Seca-Chr9 25954613 25955482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01530 46 245 ZF-HD Transcription Factor Family AT1G69600 50.472 1.63e-54 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca9g01530 ZF-HD_dimer 4.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01530 - - lang:109355848 263.462