Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01525 ATGTTGAATGTTGACGTAATTGGCAACAAAAAAAGGAAGAGATGTGGGAGGGTTTTCAGGTTCAAGAACTTTGGTGAACCAGGGTACCCAGTTATGTTTACAGGGCCATTTCGGGAGAATGTGAATGCATTACTTGAATATGCAAATTTGGAGAGTAATTTAAGCATGGGAATGTCAATATGGTCATTTCAACTTGAAGTTCATCACCACCCACCTTTACATATCTTGTTGTTTGTGATTGAAGAGCCAATAGAGGCAGCACTAAATCGTCATTGCAAGCATTGTCAATACATTGGCTGGGGAAACCACTTCATTTGCAATAAGAAGTATCATTTCTTGTTACCCTCAAAGGAGGCACTGGCTACTTGCACAAGCTGTGAAGGGTGCTGTGATGTAATTGCTACAATGAATAATAATGGTAAGTCCAAATTAATAGAATTACAGGGCCATTTGATGCATGGTGTTTTTCACTCTAATGGATTCGGGCATTTGCTATGTGTGAATGGATTGGAAACCGGTTCGAATTTGGCTGGGAACCAGATCATGGAGTTTTGGAATCGTTTGTGCAACGGATTGCAAGCAAAGAAAGTGAGTTTGAATGACATTTCACAGAAAAGAGGCATGGAACTCAGACTTGTTAATGGAATAGCATATAGTGAACCATGGTTTGGTCGTTGGGGTTACAAATTTGGTAGAGGATGCTTTAATGTAACTCAATCAATGTACCACAAGGCCATAGAGGCAATAAGAAGCATGCCACTCTACTTGTTCACACACCACATTGGCAATTCCAACCATGACATTCCACTCATTTTCTCAAGGTATCAAACACTTTCAGATCAATCTCTTGTGACCCTTGGCGACCTATTTCGTTACATGTTAGAGCTCAAGTCACGCCTTCCCCGTGAAACCTGCATTGGTTCCTATAACACAAGTGCTTTGGTTGAGACCAATTGTCGTTGGTCCCCTAAAAGGATTGAGATGGCAACAAGGGTCATTGTGGAGGCCCTGAAAAGAACAGAGTTCAGGTGGGTTTCAAGGCAACAAGTTAGAGATGCTGCTCGTGCCTACATTGGTGACACAGGTTTGCTTGATTTTGTTTTGAAGTCACTAGGAAACCACATTGTAGGAAACTACTTGGTTCGTAGGAGCTTGAATCCTGTGACCAAAGTGTTGGAATATTGTTTAGAAGATATTTCTAATGTGTACCCTTGTCATGAAGGCTTGGTCATGAGTAATAGTAATAAAGTGAAGGATAAGTATAAGATCACAAGGTCTCAACTCATGAAGGACATGCTTTATTTGTACAAGTACATTCTAATAGACCCAAAACCAATGATAGGATCAGAGTTTCTCTCAGCTATACCATTGGCAGCTAGGATAATTCTTGACACCAAGTATTTTATCAAAGATTACTCTGGAGAGGTTCCTTTCAAGGTTGAATTAGGCTCTGAAGGAAGACTTAACCTTTATTGTACAATTTTGTTGAGGAACAATGCTGGCATTGATGGGTATTTTAACATGGCAGTGCCACCTTATGAATGTGTCACATTGAAAAGCAGTGCTACAATTAATGACTTGAAGGTGGAAGTTGAAAGGAATTTCAGGGAAATGTATTGGGGATTAAGGTGTTTTGTGGTGGAATCAGCTGGGAATTTGAGTGCCAATGGGAATGAAATTGTTTTTGGGCTAATTGAAGTGGGTGGGAAACTTGTGCTTGAAGGTTATTGGCATGGTGGTGACATGGGAATAAATGTGATTGAACAAATATGTGAAAGTGACCCAAATAGTGGCATTGTGGACTGCATTTGTGGAACTAAAGAAGAGGATGGTGAGAGGATGGTGTCTTGTGACATTTGTGAAATTTGGCAACACACTAGGTGTGTTCGCATTCCAAATGATGAAGAAGTTCCTCATATTTTTCTGTGCAAAAGGTGCGAGCAAGAAATTGTTCTGTTCCCTTCTTTGCCATAG 1974 0.4037 MLNVDVIGNKKRKRCGRVFRFKNFGEPGYPVMFTGPFRENVNALLEYANLESNLSMGMSIWSFQLEVHHHPPLHILLFVIEEPIEAALNRHCKHCQYIGWGNHFICNKKYHFLLPSKEALATCTSCEGCCDVIATMNNNGKSKLIELQGHLMHGVFHSNGFGHLLCVNGLETGSNLAGNQIMEFWNRLCNGLQAKKVSLNDISQKRGMELRLVNGIAYSEPWFGRWGYKFGRGCFNVTQSMYHKAIEAIRSMPLYLFTHHIGNSNHDIPLIFSRYQTLSDQSLVTLGDLFRYMLELKSRLPRETCIGSYNTSALVETNCRWSPKRIEMATRVIVEALKRTEFRWVSRQQVRDAARAYIGDTGLLDFVLKSLGNHIVGNYLVRRSLNPVTKVLEYCLEDISNVYPCHEGLVMSNSNKVKDKYKITRSQLMKDMLYLYKYILIDPKPMIGSEFLSAIPLAARIILDTKYFIKDYSGEVPFKVELGSEGRLNLYCTILLRNNAGIDGYFNMAVPPYECVTLKSSATINDLKVEVERNFREMYWGLRCFVVESAGNLSANGNEIVFGLIEVGGKLVLEGYWHGGDMGINVIEQICESDPNSGIVDCICGTKEEDGERMVSCDICEIWQHTRCVRIPNDEEVPHIFLCKRCEQEIVLFPSLP. 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01525 657 ProSiteProfiles Zinc finger PHD-type profile. 599 649 IPR019787 -
Seca9g01525 657 SUPERFAMILY FYVE/PHD zinc finger 593 649 IPR011011 -
Seca9g01525 657 ProSitePatterns Zinc finger PHD-type signature. 602 646 IPR019786 -
Seca9g01525 657 Pfam PHD-finger 602 648 IPR019787 -
Seca9g01525 657 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 650 - -
Seca9g01525 657 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 587 650 IPR013083 -
Seca9g01525 657 SMART PHD_3 601 647 IPR001965 -
Seca9g01525 657 CDD PHD_MMD1_like 601 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01525 Seca-Chr9 25910300 25913110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01525 10 657 PHD Transcription Factor Family AT5G22260 51.316 0.0 662
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca9g01525 PHD 2.5e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01525 K26271 - gmx:100780210 1177.93