Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01513 ATGGCTACTGAGCCTGATGTCTCTGAGATTTCCTCTCTGTTCGAAAGGCTGGTGAGAAACAGAGACATGTCTCTGTTTTTGCCCTTCTTCTTTGGCTTCTCAGACGCTTCTCCTAGGACAGATAGGGAGGAGGACCCAGATCAGGAAACTGAGCGAAATGAAGGTTCTCAGCATCAAAGAATCATCTTGGTGAACCCCTTCACACAGGGCATGGTGGTAATTGATGGGGCTTCAAGCCTTGAGGCTCTGTTCCGCGAGCTTGGGAATACCAAGGGTGGTCGACCACCGGCTTCCAAGGAATCCATTGACGCTATGGCAAGTGTTGAAATTGGAGAAGGTGAAGATGGGGAGTGTGTTGTTTGTCTGGAGGACTTTGAGGTTGGTGGGGTGGTAAAAGAGATGCCTTGTAAGCATAGGTTTCATCAAAATTGCATTGAGAAGTGGTTGGGGATTCATGGGTCTTGCCCTGTTTGCAGGTATGAGATGCCTGTTGATGAGAAAGATGTGGGCAAGAAAAGGGATGAAGAAGGGGGAGAGAGGAGGAGGGGAGGTGGAGAAGTTTGGGTTAGTTTTTCTTTCAATGGAAGTAGGAGAAGCCAGGATCAAAATCAAGCTTCTCCTGCTGATGATTCAAGTGATTCTTCATCAAGTCCTGGCGGTGATGCTGAGGTAGAGAATTGA 681 0.4802 MATEPDVSEISSLFERLVRNRDMSLFLPFFFGFSDASPRTDREEDPDQETERNEGSQHQRIILVNPFTQGMVVIDGASSLEALFRELGNTKGGRPPASKESIDAMASVEIGEGEDGECVVCLEDFEVGGVVKEMPCKHRFHQNCIEKWLGIHGSCPVCRYEMPVDEKDVGKKRDEEGGERRRGGGEVWVSFSFNGSRRSQDQNQASPADDSSDSSSSPGGDAEVEN. 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01513 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 165 IPR013083 -
Seca9g01513 226 MobiDBLite consensus disorder prediction 37 58 - -
Seca9g01513 226 MobiDBLite consensus disorder prediction 167 226 - -
Seca9g01513 226 ProSiteProfiles Zinc finger RING-type profile. 118 159 IPR001841 -
Seca9g01513 226 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 39 163 - -
Seca9g01513 226 SMART ring_2 118 158 IPR001841 -
Seca9g01513 226 Pfam Ring finger domain 117 159 IPR001841 -
Seca9g01513 226 MobiDBLite consensus disorder prediction 37 56 - -
Seca9g01513 226 FunFam E3 ubiquitin-protein ligase RNF181 86 165 - -
Seca9g01513 226 MobiDBLite consensus disorder prediction 167 183 - -
Seca9g01513 226 MobiDBLite consensus disorder prediction 192 226 - -
Seca9g01513 226 SUPERFAMILY RING/U-box 101 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01513 Seca-Chr9 25801257 25801937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01513 1 201 C3H Transcription Factor Family AT1G26800 54.146 1.71e-69 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01513 - - pcin:129321278 273.863