Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01510 ATGCATTTTGTTCTGTCCACTGATGCCAAACCAAGGCTAAAATGGACTCCTGAGCTTCACCAACGATTCATTGAGGCAACTAATCAGCTTGGAGGTGCAGAAAAGGCAACCCCAAAGAGTCTTATGAGGGTGATGGGGATTCCAGGACTTACTTTGTACCACCTGAAGAGCCATTTACAGGCATTCCCCTTTTGTAATGATAGTATAATTCTTTGTTTTCCATTTACTGAATCTGGAAATCAGGATTTGTAA 252 0.4167 MHFVLSTDAKPRLKWTPELHQRFIEATNQLGGAEKATPKSLMRVMGIPGLTLYHLKSHLQAFPFCNDSIILCFPFTESGNQDL. 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01510 83 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 2 62 IPR044848 GO:0003700
Seca9g01510 83 Pfam Myb-like DNA-binding domain 12 60 IPR001005 -
Seca9g01510 83 ProSitePatterns Glycoprotease family signature. 39 59 IPR017860 -
Seca9g01510 83 Gene3D - 9 63 - -
Seca9g01510 83 FunFam Two-component response regulator 6 69 - -
Seca9g01510 83 NCBIfam myb-like DNA-binding domain, SHAQKYF class 10 62 IPR006447 GO:0003677
Seca9g01510 83 SUPERFAMILY Homeodomain-like 9 63 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01510 Seca-Chr9 25789805 25790172 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01510 1 62 G2-like Transcription Factor Family AT1G69580 77.419 6.41e-30 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca9g01510 Myb_DNA-binding 3.8e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01510 - - lja:Lj2g3v1277750.1 124.405