Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01509 ATGCCTCAGGAGATGGTTATTAAGGACTCAGCCATAAAGCTCTTTGGTAGAACGATTTCTCTGCCACGCAACACCGAGGTCTCTGCCTCTGCCAATCATTCTTCCTCTGTTCTTCCTGAAGATTTCTCTGATCTTAGTCCTCCTTCATCTTCATCTTCTCCACGTGAAGTGACCACTGCAACCAAACATGAAGCAGAGAAGGATGAGGAACCATCAAAGAAAGAACTCACCTCAGCACAAGATGATGAGGCCTCACATCAAACAACAGAGGATTTAAAATCTCCCACATCTTCAGACATTTTTGAGAACCCCAAGACTCCCTCAGCTGAAAGAGAAACCTCTTTACTGAACTCCTCAAAAAATGGAGAACAGAGTGATACAAGCATGTCACAAGACAAAACTCCAAAGAAACCAGACAAGATACTTCCATGCCCACGATGCAACAGCATGGACACCAAATTTTGTTACTACAACAACTACAATGTCAACCAACCTCGTCACTTCTGCAAGAACTGCCAGAGATACTGGACTGCTGGAGGAACCATGAGAAACGTGCCTGTAGGTGCAGGTCGCCGCAAGAACAAAAACTCTTGTTGTTCTTCTTCTGCTTCTGTTGCTGCTTCACATTATCGTCAAATGATGGTTCCTGAGACCCTTCAAGCAGCTAAACTCAACGCAACCAATGGATTGCACAGCTCTATGTTGGGAAATGCAGCAGGTGTTTTAACCTTTGGACCAGATTCTCCTCTATGTGATTCCATGGCTTCTGTGTTGAGCCTTGCTGATAAAACACAACACCATAATGGTGTTGTTCTAAATGGTTTCCAAGCACCTAAGCAGAACCATTTTGTTTCATGTGGTAGGGAAGATAATAATATTCATAACAATGGGAATGATTTCTCAGTTGGAGCTTCTGTTATGGCATCTGAGAAGAGAGGCAATGCTAACTCACATGAAGAATCATTGGATAATAAGAGTTATCAAGGTTTGCCTCCTCAATTTCCCTTCCAAGGTGCTTCTTCCCCTTGGCCTTATCCATGGAACCCTGCATTTTGCCAACCAAGTTACCCTGTGTCATTCTATCCCACACCACCATACTGGGGTGGTTGTTTGCCACCATCTTGGAGGGTACACCCTATCTCTCCTCAATCTTCTGTTAACCAATCTGCTCCTAGTTCTGGTCCAAATTCACCTACTTTGGGGAAACATTCAAGGAATGGGGACATCCTCTTCTCATCCAACTCAGAGAATAGTGTGTTGATCCCCAAGACACTGAGAATTGATGACCCTAGTGAAGCTGCAAAGAGTTCTATATGGTCAACACTAGGGATCAAGAATGAGAAGGGAAATTCTCTAAATGGAGGAGGACTATTCAAGGCATTTGCATCCAAGTCCAAGGGTGGTGATGACAAGAATCATGTGGTTGAAACATCCCCAGTGTTGCAAGCCAACCCTGCAGCTTTATCAAGGTCTCTTACCTTCCATGAGAGGACTTGA 1497 0.4415 MPQEMVIKDSAIKLFGRTISLPRNTEVSASANHSSSVLPEDFSDLSPPSSSSSPREVTTATKHEAEKDEEPSKKELTSAQDDEASHQTTEDLKSPTSSDIFENPKTPSAERETSLLNSSKNGEQSDTSMSQDKTPKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSCCSSSASVAASHYRQMMVPETLQAAKLNATNGLHSSMLGNAAGVLTFGPDSPLCDSMASVLSLADKTQHHNGVVLNGFQAPKQNHFVSCGREDNNIHNNGNDFSVGASVMASEKRGNANSHEESLDNKSYQGLPPQFPFQGASSPWPYPWNPAFCQPSYPVSFYPTPPYWGGCLPPSWRVHPISPQSSVNQSAPSSGPNSPTLGKHSRNGDILFSSNSENSVLIPKTLRIDDPSEAAKSSIWSTLGIKNEKGNSLNGGGLFKAFASKSKGGDDKNHVVETSPVLQANPAALSRSLTFHERT. 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01509 498 ProSiteProfiles Zinc finger Dof-type profile. 142 196 IPR003851 GO:0003677|GO:0006355
Seca9g01509 498 PANTHER CYCLIC DOF FACTOR 2 8 498 IPR045174 GO:0003700|GO:0006355
Seca9g01509 498 MobiDBLite consensus disorder prediction 90 129 - -
Seca9g01509 498 MobiDBLite consensus disorder prediction 59 89 - -
Seca9g01509 498 MobiDBLite consensus disorder prediction 309 330 - -
Seca9g01509 498 ProSitePatterns Zinc finger Dof-type signature. 144 180 IPR003851 GO:0003677|GO:0006355
Seca9g01509 498 MobiDBLite consensus disorder prediction 26 143 - -
Seca9g01509 498 MobiDBLite consensus disorder prediction 26 58 - -
Seca9g01509 498 Pfam Dof domain, zinc finger 139 196 IPR003851 GO:0003677|GO:0006355
Seca9g01509 498 MobiDBLite consensus disorder prediction 382 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01509 Seca-Chr9 25752144 25755827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01509 7 496 C2C2-Dof Transcription Factor Family AT5G39660 39.382 9.81e-88 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca9g01509 zf-Dof 3.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01509 - - lang:109358999 636.336