Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01507 ATGGCCAGCAGCAACTGTTATATGTTCCCTTCACAAGAAAACCAAAATGTCCTCACCGCCTATTACCCTCTTTCTTTTTCTTCATATGGTGTGGTTTCAACTGTTTCTTCATCTCAAGAGAGTAACTATGCCTGCAAAACCTCTGTGATGGAGAATAGTAGCAATACTGAAGGATGGACTTTTCCATTTATGAGGGAATGCCTTTCCAAAAGCTTTGAGGAACAACATCCCAACATGGATGATGTGGAGGGTTGTAATAATGGTAATTCTGATTGCAGTGATGGGATTGGGGAAAACAACCATAATGCTAACTCCAATGAAGAGAACCCTAATGAGAATCCTGTCAGTGGCAAAGAGGTAGATAGTGGACAATCCAAACTCTGTGCAAGAGGACATTGGAGACCTGCAGAAGATTCCAAGCTCAAGGAACTTGTGGCTCTTTATGGTCCTCAAAACTGGAACCTCATTGCTGAAAAGTTGGAAGGAAGATCAGGCAAGAGTTGTAGGTTGAGATGGTTCAACCAGTTGGACCCAAGGATCAACAGGAGAGCTTTCAGTGAAGAAGAGGAAGAAAGGCTAATGCAGGCACATAGAATTTATGGCAACAAATGGGCCATGATTGCTAGGCTTTTCCCTGGAAGAACAGATAATGCTGTCAAGAATCACTGGCATGTGATAATGGCCAGGAAGTACAGAGAACAATCCAGTGCTTACAGGAGGAGGAGACTGGGCCAATCTGTTTACAGAAGAATGGATCAAAATCCAAACTTTATGATCTGCAGAGATACCCCAACAACAGAAACAGAACCACCATCACCCTATTTTCTCAATGGAGCACTCAGCAATAATAGTATGGCTATTTTACCATATGCTCCATCCTTCCATGGAGGTGGTGGTGGGGTTGAGTATGGCTTAAATGTTTCAACCCACATGACTGGTGGGAGAGAAGCAATGTCAAGAAATGAGCAGGCCCCCCCACATGTTGGCTTGTATACTCAACAGGCACCATATGATTTCTTCTCTGGTGCAAGAAGCAATGACATGGTGGGAGAGTCTTTCAGTCAGATCAGATGCTGGGACAGAACTAGTGATGATCAATATCATCATCAAGTATCTGGTTTCTACCCTCCTCCTTATTATCCCCAACAATATATGCCAAACAATCACAATTTTTACAGTTACTCAAATTCCTCAGCCAGGGAACCATCATCCGTAGCAGCAGAAAACAGAAACAGAGATAAAGTTGTGATGAGTGACCCCTCAGATGCTGTTTCACCTCCATTTTTTGACTTCCTCGGAGTAGGAGCCAAATGA 1314 0.433 MASSNCYMFPSQENQNVLTAYYPLSFSSYGVVSTVSSSQESNYACKTSVMENSSNTEGWTFPFMRECLSKSFEEQHPNMDDVEGCNNGNSDCSDGIGENNHNANSNEENPNENPVSGKEVDSGQSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLGQSVYRRMDQNPNFMICRDTPTTETEPPSPYFLNGALSNNSMAILPYAPSFHGGGGGVEYGLNVSTHMTGGREAMSRNEQAPPHVGLYTQQAPYDFFSGARSNDMVGESFSQIRCWDRTSDDQYHHQVSGFYPPPYYPQQYMPNNHNFYSYSNSSAREPSSVAAENRNRDKVVMSDPSDAVSPPFFDFLGVGAK. 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01507 437 MobiDBLite consensus disorder prediction 79 126 - -
Seca9g01507 437 FunFam MYB transcription factor 130 181 - -
Seca9g01507 437 ProSiteProfiles Myb-like domain profile. 130 176 IPR001005 -
Seca9g01507 437 SMART sant 129 178 IPR001005 -
Seca9g01507 437 SMART sant 181 229 IPR001005 -
Seca9g01507 437 Pfam Myb-like DNA-binding domain 130 176 IPR001005 -
Seca9g01507 437 Pfam Myb-like DNA-binding domain 182 225 IPR001005 -
Seca9g01507 437 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 177 231 IPR017930 -
Seca9g01507 437 FunFam MYB transcription factor 183 253 - -
Seca9g01507 437 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 130 176 IPR017930 -
Seca9g01507 437 PANTHER MYB PROTEIN-RELATED 116 340 - -
Seca9g01507 437 CDD SANT 133 174 IPR001005 -
Seca9g01507 437 MobiDBLite consensus disorder prediction 82 120 - -
Seca9g01507 437 SUPERFAMILY Homeodomain-like 130 223 IPR009057 -
Seca9g01507 437 CDD SANT 184 224 IPR001005 -
Seca9g01507 437 Gene3D - 183 250 - -
Seca9g01507 437 Gene3D - 130 181 - -
Seca9g01507 437 ProSiteProfiles Myb-like domain profile. 177 227 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01507 Seca-Chr9 25725719 25727436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01507 73 296 MYB Transcription Factor Family AT1G69560 54.911 4.77e-77 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca9g01507 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01507 K09422 - gmx:100789305 456.447