Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01505 ATGGGCCGGGTAAAGCTAAAGATAAAGAGGTTGGAGAACACTAATGGTCGCCAAGCAACTTATGCTAAAAGGAAGAATGGAATCATGAAAAAAGCTACTGAATTATCTATACTATGTGATATAGATATTATACTTCTCATGTTCTCACCAAGTGGAAAGCCTTCAATATGTAGGGGGAGGCGCAGTAACTTCGAGGAGGTTATTGCAAAGTTTGCTCAACTAACTCCACAAGAAAGAGCAAAGAGGAAGTTGGAGAGTCTCGAAGTAAGTTATACCTTACATCTCATTATGCATACTAAGTGTGTTTGGTACTAA 315 0.3873 MGRVKLKIKRLENTNGRQATYAKRKNGIMKKATELSILCDIDIILLMFSPSGKPSICRGRRSNFEEVIAKFAQLTPQERAKRKLESLEVSYTLHLIMHTKCVWY. 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01505 104 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca9g01505 104 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca9g01505 104 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca9g01505 104 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Seca9g01505 104 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Seca9g01505 104 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Seca9g01505 104 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 86 - -
Seca9g01505 104 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca9g01505 104 FunFam Agamous-like MADS-box protein AGL30 14 94 - -
Seca9g01505 104 Gene3D - 14 92 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01505 Seca-Chr9 25675192 25676800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01505 1 88 Type I MADS-box Gene Family AT2G03060 80.682 3.17e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca9g01505 SRF-TF 2.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01505 - - gmx:100811701 156.377