Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01492 ATGGAGTCCAAAACAAGCTCTGAACTCCCACCTGGCTTCAGGTTTCACCCCACTGATGAGGAACTAATTGTGTACTACCTTTGTAACCAAGCCACATCACAACCATGCCCTGCATCTATCATCCCAGAAGTGGATATCTATAAATTTGATCCATGGGAATTGCCTGATAAATCAGACTTTGGAGAAAATGAATGGTATTTCTTTAGTCCAAGAGAGAGGAAATATCCAAATGGGGTGAGGCCTAACAGAGCAACTGTGTCAGGGTATTGGAAAGCTACTGGAACAGACAAAGCAATCTATAGTGGGTCTAAGCATATTGGGGTGAAGAAAGCTTTGGTTTTTTACAAAGGTAGGCCACCAAAGGGCTTGAAGACAGATTGGATTATGCATGAGTATAGATTAATTGGATCAAGAAGACAAGCCAACAAACAAATTGGGTCCATGAGAGTAAGCAAGCCTATGTGTCATCAGCTGGATGACTGGGTGTTGTGTAGGATCTACAAGAAGAAGAACATAGGGAAATCAGTGGAGGAAAAAGAGGAGTACCCAACAGCAGAAATCAATGTGACAGCAGCAAATGAGGAGAGTGAACAAGGAATGATGAAATTTCCAAGGACATGTTCCCTTACTAATCTTTTGGAAATGGATTACTTGGGTCCAATATCACATATATTATCTGATGGATCATATAATTCAACCTTTGAATTTCAAATGAACACTGCACATGGTGGAATAGACCCTTTTGTAAAATCACAGCTGGGTGAAATGCCTACTAATTATGCAGCAGATTCAGGGAAGTACCAAGTGAAACAGAATACCACTGTCAACCCAACCATATTTCTGAACCAAGTATATGACCATAGAGGATAA 870 0.4057 MESKTSSELPPGFRFHPTDEELIVYYLCNQATSQPCPASIIPEVDIYKFDPWELPDKSDFGENEWYFFSPRERKYPNGVRPNRATVSGYWKATGTDKAIYSGSKHIGVKKALVFYKGRPPKGLKTDWIMHEYRLIGSRRQANKQIGSMRVSKPMCHQLDDWVLCRIYKKKNIGKSVEEKEEYPTAEINVTAANEESEQGMMKFPRTCSLTNLLEMDYLGPISHILSDGSYNSTFEFQMNTAHGGIDPFVKSQLGEMPTNYAADSGKYQVKQNTTVNPTIFLNQVYDHRG. 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01492 289 Gene3D NAC domain 18 173 IPR036093 GO:0003677|GO:0006355
Seca9g01492 289 ProSiteProfiles NAC domain profile. 9 169 IPR003441 GO:0003677|GO:0006355
Seca9g01492 289 FunFam NAC transcription factor 18 173 - -
Seca9g01492 289 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 222 - -
Seca9g01492 289 Pfam No apical meristem (NAM) protein 10 134 IPR003441 GO:0003677|GO:0006355
Seca9g01492 289 SUPERFAMILY NAC domain 4 169 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01492 Seca-Chr9 25553211 25554287 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01492 1 224 NAC Transcription Factor Family AT1G69490 66.525 5.79e-114 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca9g01492 NAM 4.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01492 - - gmx:732552 508.449