Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01486 ATGAGGTGTGAGAAGGTAGGGTTGAAGAAAGGGACATGGAGTCGAGAAGAAGACGAGAAGCTTGTTTCTTATATTAAACAACATGGCCATGGAAACTGGTCTTCATTGCCCGCTAGAGCTGGTCTTGAAAGGTGTGGAAAGAGTTGCAGATTGAGGTGGATCAACTATCTGAGACCTGACATAAAACGAGGAAACTTCACCTCCGAAGAAGACCGCACTATTATTCAACTCCATGCCCTTCTTGGAAACAACAGATGGTCCATAATAGCAGGTCAGTTGCCAAAAAGAACAGACAATGAGATAAAGAACTACTGGAATACTCACATCAAGAAAAGGCTTATTAGAATGGGCATAGATCCCATTACCCACAAAAGATCTTCATCAAAATTAGGCAATAGCCTCCACATGGCTCAATGGGAGACTGCACGACTCCAAGCTGAAGCCCGACAATCCCTAATCCCTAAACCTAATTCATTAGCTGAAGGTAATAATAATATGATAATGGATGGGTATGTGTCAAAGTCAAGCTTGCATGATACTGATGACATCATGGTGGTCGTCCAAGCATATATTTAG 576 0.4219 MRCEKVGLKKGTWSREEDEKLVSYIKQHGHGNWSSLPARAGLERCGKSCRLRWINYLRPDIKRGNFTSEEDRTIIQLHALLGNNRWSIIAGQLPKRTDNEIKNYWNTHIKKRLIRMGIDPITHKRSSSKLGNSLHMAQWETARLQAEARQSLIPKPNSLAEGNNNMIMDGYVSKSSLHDTDDIMVVVQAYI. 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01486 191 SMART sant 62 111 IPR001005 -
Seca9g01486 191 SMART sant 9 59 IPR001005 -
Seca9g01486 191 Gene3D - 65 113 - -
Seca9g01486 191 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 113 IPR017930 -
Seca9g01486 191 CDD SANT 12 57 IPR001005 -
Seca9g01486 191 ProSiteProfiles Myb-like domain profile. 58 109 IPR001005 -
Seca9g01486 191 FunFam Transcription factor RAX3 3 63 - -
Seca9g01486 191 FunFam MYB transcription factor 64 126 - -
Seca9g01486 191 Gene3D - 9 62 - -
Seca9g01486 191 CDD SANT 65 109 IPR001005 -
Seca9g01486 191 SUPERFAMILY Homeodomain-like 7 105 IPR009057 -
Seca9g01486 191 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Seca9g01486 191 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 157 - -
Seca9g01486 191 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 57 IPR017930 -
Seca9g01486 191 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Seca9g01486 191 Pfam Myb-like DNA-binding domain 63 108 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01486 Seca-Chr9 25479998 25480921 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01486 3 149 MYB Transcription Factor Family AT3G01140 69.427 1.99e-77 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca9g01486 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01486 K09422 - mnt:21398771 241.891