Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01477 ATGGAAGAGACAGAGGAGTCCACCAATGCTAATCAGAAATTCACTACCAAAAGAAGAACCTTCAGGAATGGAGCCAACTCTCATGAACATCATCACTATCAGCACCATCAGTTGCTACAATACTCAACTCAGCTTGGGTCCTGCAACAATCAGAACAAGTATCAGAGGTACTACCCAGCTCTTCTTCCTCTACCTTCTCTTATACCTCTCCAACAACTACCTTCTCTTATACCTCTCCAACAACTACCTTTGACTCCACCCTTCCCTCAAAACCAGACCATCAAATCAAAAACCCATTTGCTGAAACCTCCATGCAAACTCAATAGTTCTCCTTCCTCTGATTACAAGCTCTCTGAACCACCACTTGCTCCTGACCCTCTGATGAGCAAAATACCTTGTTATTTGTGCTTACTAGTTCCTTTGTTTACTGATTCAGCTCCAAAGGAACTTCAGCAGCAAACAAAGGCATCCTTTAAAGGAGGTGATGGTAAGAAACTGATTCCACCAAGGAAGCCACAAGCAGAAATTGTTGCAAGGAGGCCAGACTCTGGTGGCAAAGAAGGTTCTGTGATCTCTCTCCTTGCCAACCACTTTTTGGTGCAATTTGATCCATCACAAAAAATATATCATTACAATGTTGAAATTACTCCTCATCCCTCCAAGGATATTGCTAGAGTAATCAAACAGAATTTGGTAAATAACAATTCTGCTTTACTCTCGGGTGCTATTCCGGCATATGATGGGAGGAAGAATCTTTACAGCTCAATTGAATTCCAAAATGATAAGCTTGAGTTCTACATAAGCCTCCCAATCCCCACTAGCAAATTGAGATCACCATATGGAGAAATGTATGACTTGAAAGAGAAGAATGAACAGCTTAAACTGTTCCGGATAAATATCAAACTAGTCTCAAAGATTAATGGGAAGGAATTGAATAACTACTTGAGCAAAGAGGGTGATGACTGGATTCCACTTCCACAGGATTATCTACATGCTTTGGATGTAGTTCTGAGGGAAAGTCCAACAGAGAAATGTATACCTGTAGGGAGGTCATTCTATTCAAATTCAATGGGAAGAAGCAAAGATATTGGTGGAGGAGCTGTTGGATTGAGAGGCTTCTTTCAGAGTCTTAGACCAACACAACAAGGACTTGCTCTCAATGTGGATTTCTCAGTAACTGCTTTCCATGAGAGCATAGGAGTCATTCCATACTTGCAGAAACGTCTTGAGTTTCTTCGAGACCTTTCTCAAAGGAAGACAACTCAATTAACTGGTGAAGAAAGGAAGGAAGTAGAGAAGGCATTGAAGAACATAAGGGTCTTTGTTTGCCATAGAGAAACTGTTCAGAGATACCGTGTCTATGGCTTAACAGAGGAGACCACTGAAAATCTTTGGTTTGCTGACAGAGATGGCAAGAATCTGAGGCTTGTGAATTACTTTAAAGATCACTATAACTATGACATACAATTCAGGAAATTGCCATGCTTGCAAATTAGTAGGAGTAAACCTTGTTATCTCCCTATGGAGCTATGTGTGATCTGTGAAGGCCAGAAATTCCTTGGGAGATTGTCTGATGATCAGACAGCAAGAATACTCAGGATGGGCTGCCAAAGACCAGGAGAACGAAAAACCATCATTGAAGGAGTCATGAGAGGAACTGTTGGGCCTACAAGTGGCGACCAGGAAAGAGAATTCAAACTCCAAGTCTCTAGAGAAATGACAAGGTTGACTGGGAGAATTCTTCACCCTCCTAAACTAAAGCTTGGAGATGGAGGTCATGTTAGAAACCTGACTCCTTCACGGCATGACCGCCAATGGAACCTTCTGGATGGCCATGTTGTTGAAGGAGCTACAATTGAAAGGTGGGCACTAATAAGCTTTGGTGGCACACCTGAGCAGAAGTCCAATATCCCCAGATTCATAAACCAGTTATCTCAAAGGTGTGAACAATTGGGCATTTTTCTTAATAAGAACACAGTTATTAGTCCCCAGTTTGAGTCAAGCCAGGTTCTTAACAATGTCACCCTTTTGGAATCTAAGCTCAAGAGAATCCAGAGGACTGCCTCAAACAATCTCCAGCTTCTTATTTGTATAATGGAGAGAAAACACAAAGGGTATGCAGACTTGAAACGAATTGCTGAGACAAGTGTTGGTGTTGTAAGCCAATGCTGCCTGTACCCAAATCTCAGCAAGTTAAGTTCACAATTTTTGGCTAATTTGGCCCTCAAAATCAATGCCAAAGTTGGTGGATGCACAGTTGCTTTGTACAACTCACTACCTTCTCAAGTACCAAGGCTCTTTCGGATTGATGAGCCAGTGATATTCATGGGAGCTGATGTGACACATCCTCATCCTCTTGATGATTTCAGTCCTTCTGTTGCTGCTGTTGTTGGCAGCATGAATTGGCCAACAGCAAATAAATACATTTCAAGAATAAGGTCTCAAACACATAGACAAGAAATTATCCAGGATCTTGGTGCAATGGTAGGGGAATTGCTTGATGATTTTTATCAGGAAGTAGAGAAACTCCCCAACAGAATAATTTTCTTCAGAGATGGGGTTAGTGAAACTCAATTTTATAAAGTGCTGGAAGAGGAACTGCAATCCATAAGGCATGCATGTTCAAGGTTTCCTGGTTATAAGCCTTTCATTACTTTTGCAGTTGTGCAGAAGAGGCATCACACAAGGTTGTTTCCCTTTGAAACTGACCAATCTTCCCCACAAAACCATTTCTTATATGAAAATATTCCTCCAGGGACAGTGGTTGATTCTGTGATTACTCATCCAAAAGAATTTGACTTCTATCTCTGTAGCCATTGGGGTGTGAAAGGAACAAGCAGGCCAACTCATTACCATGTCTTGTGGGATGAAAACCAGTTTACTTCTGATGAACTGCAAAAACTGGTTTACAATTTATGCTATACTTTTGTTAGGTGTACCAAGCCAATATCTTTGGTGCCTCCTGCATATTATGCCCATTTAGCAGCATACAGAGGCAGACTCTACCTTGAGCGATCAGAGTCCTTAGGTTTGTTCAGAAGTTCATCTACATTATCCAGAGCTGCTCCTCCAAAGACAACACCTCTACCTAAACTTAGTGAAAACATCAAGAAACTCATGTTCTACTGCTAG 3132 0.4141 MEETEESTNANQKFTTKRRTFRNGANSHEHHHYQHHQLLQYSTQLGSCNNQNKYQRYYPALLPLPSLIPLQQLPSLIPLQQLPLTPPFPQNQTIKSKTHLLKPPCKLNSSPSSDYKLSEPPLAPDPLMSKIPCYLCLLVPLFTDSAPKELQQQTKASFKGGDGKKLIPPRKPQAEIVARRPDSGGKEGSVISLLANHFLVQFDPSQKIYHYNVEITPHPSKDIARVIKQNLVNNNSALLSGAIPAYDGRKNLYSSIEFQNDKLEFYISLPIPTSKLRSPYGEMYDLKEKNEQLKLFRINIKLVSKINGKELNNYLSKEGDDWIPLPQDYLHALDVVLRESPTEKCIPVGRSFYSNSMGRSKDIGGGAVGLRGFFQSLRPTQQGLALNVDFSVTAFHESIGVIPYLQKRLEFLRDLSQRKTTQLTGEERKEVEKALKNIRVFVCHRETVQRYRVYGLTEETTENLWFADRDGKNLRLVNYFKDHYNYDIQFRKLPCLQISRSKPCYLPMELCVICEGQKFLGRLSDDQTARILRMGCQRPGERKTIIEGVMRGTVGPTSGDQEREFKLQVSREMTRLTGRILHPPKLKLGDGGHVRNLTPSRHDRQWNLLDGHVVEGATIERWALISFGGTPEQKSNIPRFINQLSQRCEQLGIFLNKNTVISPQFESSQVLNNVTLLESKLKRIQRTASNNLQLLICIMERKHKGYADLKRIAETSVGVVSQCCLYPNLSKLSSQFLANLALKINAKVGGCTVALYNSLPSQVPRLFRIDEPVIFMGADVTHPHPLDDFSPSVAAVVGSMNWPTANKYISRIRSQTHRQEIIQDLGAMVGELLDDFYQEVEKLPNRIIFFRDGVSETQFYKVLEEELQSIRHACSRFPGYKPFITFAVVQKRHHTRLFPFETDQSSPQNHFLYENIPPGTVVDSVITHPKEFDFYLCSHWGVKGTSRPTHYHVLWDENQFTSDELQKLVYNLCYTFVRCTKPISLVPPAYYAHLAAYRGRLYLERSESLGLFRSSSTLSRAAPPKTTPLPKLSENIKKLMFYC. 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01477 1043 FunFam Protein argonaute 7 393 519 - -
Seca9g01477 1043 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 172 1006 - -
Seca9g01477 1043 MobiDBLite consensus disorder prediction 96 119 - -
Seca9g01477 1043 CDD PAZ_argonaute_like 402 514 - -
Seca9g01477 1043 SUPERFAMILY PAZ domain 393 551 IPR036085 GO:0005515
Seca9g01477 1043 FunFam protein argonaute 10-like 764 1043 - -
Seca9g01477 1043 FunFam Argonaute 10 580 756 - -
Seca9g01477 1043 SMART Piwi_a_2 694 1004 IPR003165 GO:0003676
Seca9g01477 1043 MobiDBLite consensus disorder prediction 96 116 - -
Seca9g01477 1043 Gene3D - 580 756 - -
Seca9g01477 1043 Gene3D paz domain 392 519 - -
Seca9g01477 1043 ProSiteProfiles Piwi domain profile. 694 1004 IPR003165 GO:0003676
Seca9g01477 1043 SUPERFAMILY Ribonuclease H-like 679 1004 IPR012337 -
Seca9g01477 1043 Gene3D - 766 1043 IPR036397 GO:0003676
Seca9g01477 1043 Pfam Piwi domain 695 1001 IPR003165 GO:0003676
Seca9g01477 1043 Pfam PAZ domain 409 531 IPR003100 GO:0005515
Seca9g01477 1043 Pfam N-terminal domain of argonaute 191 337 IPR032474 -
Seca9g01477 1043 SMART PAZ_2_a_3 406 537 IPR003100 GO:0005515
Seca9g01477 1043 CDD Piwi_ago-like 563 1003 IPR045246 -
Seca9g01477 1043 ProSiteProfiles PAZ domain profile. 406 515 IPR003100 GO:0005515
Seca9g01477 1043 SMART DUF1785_2 346 398 IPR014811 -
Seca9g01477 1043 Pfam Argonaute linker 1 domain 347 396 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01477 Seca-Chr9 25369923 25375242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01477 185 1043 Eukaryotic Initiation Factors Gene Family AT1G48410 41.695 0.0 643
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01477 K11593 - gmx:100797755 1869.36