Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01472 ATGATGGGTATAGATGGCGAAAATATGGACAGAAAGTTGTCAAAGGCAACCCTTATCCTAGGTTGTAATGTCCGGAAGCATGTAGAGAGAGCTTCAACAGATCCTAAAGCTGTCATAACAACATATGAAGGAAAACATAATCATGATGTTCCAGCAGCTAAGACTAACAGCCACACTATTGCTAACAATAGTGCATCACAGTTAAGATCACAAAATACCATACCTGAGATGCATAGTTTCAGCAGCAGAGGTATTGGGGGCAATGAGCAACAGCCTGTTGCACGTCTAAGGCTGAAGGAAGAGCAGATAACCTAA 315 0.419 MMGIDGENMDRKLSKATLILGCNVRKHVERASTDPKAVITTYEGKHNHDVPAAKTNSHTIANNSASQLRSQNTIPEMHSFSSRGIGGNEQQPVARLRLKEEQIT. 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01472 104 Pfam WRKY DNA -binding domain 6 49 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca9g01472 104 MobiDBLite consensus disorder prediction 63 88 - -
Seca9g01472 104 MobiDBLite consensus disorder prediction 63 104 - -
Seca9g01472 104 Gene3D WRKY domain 2 52 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca9g01472 104 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 21 73 IPR044810 GO:0003700
Seca9g01472 104 SMART WRKY_cls 12 50 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca9g01472 104 SUPERFAMILY WRKY DNA-binding domain 18 51 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca9g01472 104 ProSiteProfiles WRKY domain profile. 1 51 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01472 Seca-Chr9 25284899 25285643 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01472 4 104 WRKY Transcription Factor Family AT2G03340 57.426 2.62e-27 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca9g01472 WRKY 5.9e-08 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01472 - - gmx:100799335 155.221