Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01471 ATGTTAGGCGGTGGAAATGGAGACCGACCACCGTCTAATAAAGAGGCGGCGGCTACTGGCGGCGGAGGGGGGGGACCACCGCCTCGACCCACCATCACTCTGCCGCCACGTACGGACACCCTTTTCAACGGTGGTTTCAGCCCTGGTCCCATGACTCTGCTCTCTAATTTCCTCTCCGACGGCGACGACTGCAAGTCCTTCTCGCAGCTCCTCGCCGGCGCCATGGCGTCTCCGGTGGCGGCCACCGCCGGTTTGCTCGACTCGCCTGGCTTCTTTTCACCACAGGTGTCCTTTGGAATGACACACCAGCAAGCACTAGCACAGGTCTCAGCTCAATCTGTGCAGTCCAACTCAAACATGCATATCCAAGCTGAACATTCATTGTCTGTATCAGTACCACCTGCTACCTCATTGACACAGGTTCCTGCATCTATTTCCAATACTTCACAACAGCTGATGCCACGCTTAACAGCAGCCTCTCAGGCAGCAATGACAGAATCCACTGATTACTCTCTCTCTGAACAAAGAGTGCAGTCTTCTTCAGTGAATGTTGATAAGCCTGCTGATGATGGCTACAACTGGAGGAAGTATGGTCAGAAACAGGTTAAGGGTAGTGAGTTTCCCCGAAGTTATTATAAGTGCACACATCCTAAGTGTCCTGTCAAGAAAAAAGTTGAGCGTTCACTTGAAGGTCATGTAACTGCAATTATTTATAAAGGAGAGCACAACCATCAACGGCCTAATCCTAACAAACGCTCAAAAGACACCATTACTTCAAATGACAATTCAAATATGCAACAAGGGAATGCTGATTCAACATCTCAAGGGATGACTACAAACTCAATGTCTAAGATGGATCCAGAATCCAGTCAGGCAACAGCTGAACATGTATCAGGAACAAGTGACAGTGAGGAAGTTGGTGATCATGGAACAGAAGTGGATGATAAAATTGTTGAGCCTGACCCCAAGAGGAGGTAA 978 0.4898 MLGGGNGDRPPSNKEAAATGGGGGGPPPRPTITLPPRTDTLFNGGFSPGPMTLLSNFLSDGDDCKSFSQLLAGAMASPVAATAGLLDSPGFFSPQVSFGMTHQQALAQVSAQSVQSNSNMHIQAEHSLSVSVPPATSLTQVPASISNTSQQLMPRLTAASQAAMTESTDYSLSEQRVQSSSVNVDKPADDGYNWRKYGQKQVKGSEFPRSYYKCTHPKCPVKKKVERSLEGHVTAIIYKGEHNHQRPNPNKRSKDTITSNDNSNMQQGNADSTSQGMTTNSMSKMDPESSQATAEHVSGTSDSEEVGDHGTEVDDKIVEPDPKRR. 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01471 325 Pfam WRKY DNA -binding domain 189 245 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca9g01471 325 SMART WRKY_cls 188 246 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca9g01471 325 MobiDBLite consensus disorder prediction 1 46 - -
Seca9g01471 325 FunFam WRKY transcription factor 175 248 - -
Seca9g01471 325 MobiDBLite consensus disorder prediction 301 325 - -
Seca9g01471 325 MobiDBLite consensus disorder prediction 252 300 - -
Seca9g01471 325 MobiDBLite consensus disorder prediction 237 325 - -
Seca9g01471 325 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 86 324 IPR044810 GO:0003700
Seca9g01471 325 ProSiteProfiles WRKY domain profile. 189 247 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca9g01471 325 Gene3D WRKY domain 173 248 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca9g01471 325 MobiDBLite consensus disorder prediction 167 186 - -
Seca9g01471 325 MobiDBLite consensus disorder prediction 167 193 - -
Seca9g01471 325 SUPERFAMILY WRKY DNA-binding domain 186 247 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01471 Seca-Chr9 25281776 25284710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01471 29 71 WRKY Transcription Factor Family AT2G03340 65.957 2.90e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca9g01471 WRKY 1.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01471 - - gmx:100127369 456.062