Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01468 ATGTCGGACGAGGAGCACCACTTCGAGTCCAAGGCTGATGCCGGTGCATCCAAGACATACCCGCAGCAAGCTGGAACAATCCGCAAAAACGGTTACATTGTCATCAAGAACAGACCCTGCAAGGTTGTGGAGGTTTCAACTTCCAAAACTGGCAAGCATGGACATGCCAAGTGTCACTTTGTTGGTATTGACATCTTCACCGGAAAAAAGCTTGAAGATATTGTTCCCTCTTCCCACAACTGTGATGTCCCTCATGTCAATCGCACTGACTACCAGCTCATCGATATCTCAGAGGATGGATTTGTAAGATTACAGTCACACTTCCCTCCTTCACTTGCTCTTCTTTATTTTCTTGAGAATGAGAATGAGATATTGATAATACCCCAGAGTGGATCTGATGTGATATATGATATGGTGAGTCTGCTGACTGAGACTGGTGGTACTAAGGATGACCTTAGGCTTCCAACCGATGAAAATCTGCTTTCGCAGATCAAGGATGGATTTGCTGAAGGTAAAGATCTTGTTGTGTCTGTTATGTCTGCCATGGGTGAGGAGCAGATTTGTGCCCTTAAGGACATTGGCCCCAAGTAA 591 0.4535 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVRLQSHFPPSLALLYFLENENEILIIPQSGSDVIYDMVSLLTETGGTKDDLRLPTDENLLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK. 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01468 196 CDD S1_eIF5A 86 193 - -
Seca9g01468 196 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Seca9g01468 196 Gene3D - 1 85 IPR014722 -
Seca9g01468 196 SMART eIF_5a_2 85 191 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Seca9g01468 196 NCBIfam translation initiation factor IF-5A 17 103 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Seca9g01468 196 Gene3D - 129 195 IPR012340 -
Seca9g01468 196 FunFam Eukaryotic translation initiation factor 5A 133 195 - -
Seca9g01468 196 MobiDBLite consensus disorder prediction 1 21 - -
Seca9g01468 196 FunFam Eukaryotic translation initiation factor 5A 1 85 - -
Seca9g01468 196 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Seca9g01468 196 SUPERFAMILY Nucleic acid-binding proteins 132 193 IPR012340 -
Seca9g01468 196 PIRSF Transl_init_eIF5A 1 108 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Seca9g01468 196 PIRSF Transl_init_eIF5A 120 194 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Seca9g01468 196 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 137 191 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Seca9g01468 196 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 137 194 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01468 Seca-Chr9 25260709 25262752 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01468 1 196 Eukaryotic Initiation Factors Gene Family AT1G13950 72.449 9.53e-96 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01468 K03263 K02180 zof:121975029 307.76