Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01440 ATGGAAGACAAGAACAGAACACCTTCCGATCCTGCAACCGCCGCTGAGTCGAGCTGGACGATCGGTGGCGATGACTCCGCCGGCGCCTATTTCTTCTCCGCTGACAGGGACAGAAGCATACTCAGCGACTTCGGCTGGAACCTCGAGCCGGACCGGATCGGCGCCGACGACGGATTGTGGCTTCCTTCTCACGTTGCGCCGACCGGTTCGATCGAACCGGCAGCGGCGGCTGCGACATCGTCGTTCAGGTCGAATAACCAGTCGGTTTCTTCCAGCTCCAGCGAGGATCCGCCGGAGAAGTCCACCGTCTCCGATGAGAAACCGCCTGAGATACCGAGTAAAAGTAAGAAGAAGGGGCAAAAGCGAATACGGCAGCCGCGGTTTGCATTTATGACTAAGAGTGAAGTTGATCATCTTGAGGATGGCTACAGATGGCGGAAGTATGGACAGAAAGCAGTTAAAAATAGTCCATTCCCTAGGTCTACAGCACCTACCTTCTCATTAAATTACGTACCCTCCTTTAATTATATTGCCATAATTCTTCCCAATTTACCATATATATGGAGCTACTATCGATGTACAAACAGCAAATGCACGGTGAAGAAAAGGGTTGAACGCTCCTCCGAGGACCCAACAATTGTGATTACTACATATGAAGGGCAGCACTGTCATCATACCGTTGGATTTCCTCGAGGGGGGATCATAAGCCACGAAGCTGCCTTTGCCGGTGGCCAATTGGCTCCTGCGATGTCACACTTGTATTATCCAGTTCAATTACCAAGAGCTAACACTTATAGCAGTATTTCTCAGCCTTGCCAAGCACAGGATCATGAAGCTGGAGGATCCAGCGCTACAATGCCACCCGATGCATCGCCACAGCCTCCTACGGATGAAGGACTGCTTGGAGATATTGTACCCCCGGGAATGCGCCACAGATGA 939 0.5154 MEDKNRTPSDPATAAESSWTIGGDDSAGAYFFSADRDRSILSDFGWNLEPDRIGADDGLWLPSHVAPTGSIEPAAAAATSSFRSNNQSVSSSSSEDPPEKSTVSDEKPPEIPSKSKKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSTAPTFSLNYVPSFNYIAIILPNLPYIWSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGFPRGGIISHEAAFAGGQLAPAMSHLYYPVQLPRANTYSSISQPCQAQDHEAGGSSATMPPDASPQPPTDEGLLGDIVPPGMRHR. 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01440 312 SUPERFAMILY WRKY DNA-binding domain 131 161 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca9g01440 312 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 84 261 IPR044810 GO:0003700
Seca9g01440 312 MobiDBLite consensus disorder prediction 266 312 - -
Seca9g01440 312 MobiDBLite consensus disorder prediction 266 280 - -
Seca9g01440 312 SUPERFAMILY WRKY DNA-binding domain 183 225 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca9g01440 312 SMART WRKY_cls 139 226 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca9g01440 312 MobiDBLite consensus disorder prediction 99 116 - -
Seca9g01440 312 Pfam WRKY DNA -binding domain 140 161 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca9g01440 312 Pfam WRKY DNA -binding domain 186 224 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca9g01440 312 MobiDBLite consensus disorder prediction 1 26 - -
Seca9g01440 312 MobiDBLite consensus disorder prediction 76 98 - -
Seca9g01440 312 MobiDBLite consensus disorder prediction 76 124 - -
Seca9g01440 312 Gene3D WRKY domain 126 220 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca9g01440 312 ProSiteProfiles WRKY domain profile. 134 227 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01440 Seca-Chr9 24944081 24951336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01440 16 311 WRKY Transcription Factor Family AT1G69310 48.125 4.96e-73 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca9g01440 WRKY 8.8e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01440 - - gmx:100170676 405.986