Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca9g01439 | ATGGAAGAGAAGAAGTTTATGTGCAAGTATTGCAGCAAGAGTTTCCCTTGTGGGAAGTCTCTTGGTGGTCACATCAGGACTCATATGATGAGTGACCATTCAGCTCCATCTCTAGCCAATGCTATGTTCAAGTTTGATGATGGAAGGAAGAGGAAGAGGGATTTGTTAGGTTCTGGAGATGATGGCCTAATTTATGGCCTTAGAGAGAACCCCAAGAAAACCACCAGGTTTGTGCACTCCAATGCCAATGCCACTTTGCAAATGGACAAGTTCTGTAAAGAATGTGGAAAAGGCTTTTCATCATTGAAAGCTCTCTGTGGTCACATGGCTTGTCACTCAGAAAAAGACAAGGGTGTCAATATTGAGAAGAAGCACAAATTGGTTATGGATAGTCAATCTGATACTGAGACTTCTGCTCCAAGGAGATCCAAGAGAATGAGGTTCAAAACCCTCAGCAACCACCCTCCTCCTCATCCTTCTTCTTCTGTTTCAGAGGTTGAGCAAGAGCAAGAAGAGGTGGCAAGGTGTTTGATGTTGTTGTCCAAAGATTCTAGCTACAGGGGTCGTTTTGCTTTGGTTACAGAGTCTTCTGATAACAATTCGGTTGTTCTGGAAGCGAAATCACCTTCTGTTGATATCAATTATGGTAAGAACTCTGTGTCTAATGCTTATGACTATGAGCTTGAGGAGAAGAAGAAGGTGCGGAAAGATACCAAGTTAAAGTCTGTTGAGATTGGTTATGATTCTGATAATTCTGATTCTGGGTATTTCAGATATGGTCCTAAAAAGGTAGACTCAGATGATTCAAGTGATGGGTTTTTCAGGAATGAAGTAAAGCCTTCAAAAGTGGGATACATAACTGGGTTTGAGGATTATGATGTTGAATCAAAGAAGATGCTGAGCAGAGATTTGGACAGTGAGAGAAAAGTTGGAGCTACAAGGAGGTTTGATTCAAAGAAGAGGCTCAACTATGGTTCTGTTGGTAAGAAGAAGACAGCAAATGGTTTTAATACCAATGATGAAACCTACAAGCATGGTGGAAAAGGGTGGAAGTATGAGTGTTTGAACAGTGAAAGAAACATTGGTTTTGGCTCTGATTATGATTCAGCATATGAGAGTGATGAAAACAGCACAGATACTGATTCTTATCCTGCTTCAAAGGCTCACAACAGCAGGAACCTTAATGGAAAAAAGTCCAGCAAGGGAAAGAAGAAAATGAAGTCAAAGAAAAACAAGGAACATGAGTGTCCAATATGCAACAAAATTTTCAGGTCAGGCCAAGCTTTGGGAGGTCACAAAAGATCCCATTTTGTTGGAGGTTCTGAAGATAACACACTGGTGATTAGACCAGGTGCTCCTGCTGTTCCTTGCCTAATTGATCTTAATCTACCTGCTCCTGTTGATGAATAG | 1410 | 0.4106 | MEEKKFMCKYCSKSFPCGKSLGGHIRTHMMSDHSAPSLANAMFKFDDGRKRKRDLLGSGDDGLIYGLRENPKKTTRFVHSNANATLQMDKFCKECGKGFSSLKALCGHMACHSEKDKGVNIEKKHKLVMDSQSDTETSAPRRSKRMRFKTLSNHPPPHPSSSVSEVEQEQEEVARCLMLLSKDSSYRGRFALVTESSDNNSVVLEAKSPSVDINYGKNSVSNAYDYELEEKKKVRKDTKLKSVEIGYDSDNSDSGYFRYGPKKVDSDDSSDGFFRNEVKPSKVGYITGFEDYDVESKKMLSRDLDSERKVGATRRFDSKKRLNYGSVGKKKTANGFNTNDETYKHGGKGWKYECLNSERNIGFGSDYDSAYESDENSTDTDSYPASKAHNSRNLNGKKSSKGKKKMKSKKNKEHECPICNKIFRSGQALGGHKRSHFVGGSEDNTLVIRPGAPAVPCLIDLNLPAPVDE. | 470 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca9g01439 | 469 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 8 | 28 | IPR013087 | - | |
| Seca9g01439 | 469 | MobiDBLite | consensus disorder prediction | 376 | 393 | - | - | |
| Seca9g01439 | 469 | SUPERFAMILY | beta-beta-alpha zinc fingers | 91 | 436 | IPR036236 | - | |
| Seca9g01439 | 469 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 90 | 117 | IPR013087 | - | |
| Seca9g01439 | 469 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 1 | 469 | - | - | |
| Seca9g01439 | 469 | MobiDBLite | consensus disorder prediction | 129 | 143 | - | - | |
| Seca9g01439 | 469 | Pfam | C2H2-type zinc finger | 6 | 29 | - | - | |
| Seca9g01439 | 469 | Pfam | C2H2-type zinc finger | 414 | 436 | - | - | |
| Seca9g01439 | 469 | Pfam | C2H2-type zinc finger | 92 | 114 | - | - | |
| Seca9g01439 | 469 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 92 | 112 | IPR013087 | - | |
| Seca9g01439 | 469 | SMART | c2h2final6 | 6 | 28 | IPR013087 | - | |
| Seca9g01439 | 469 | SMART | c2h2final6 | 90 | 112 | IPR013087 | - | |
| Seca9g01439 | 469 | SMART | c2h2final6 | 414 | 436 | IPR013087 | - | |
| Seca9g01439 | 469 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 6 | 33 | IPR013087 | - | |
| Seca9g01439 | 469 | SUPERFAMILY | beta-beta-alpha zinc fingers | 2 | 30 | IPR036236 | - | |
| Seca9g01439 | 469 | MobiDBLite | consensus disorder prediction | 129 | 168 | - | - | |
| Seca9g01439 | 469 | MobiDBLite | consensus disorder prediction | 371 | 413 | - | - | |
| Seca9g01439 | 469 | Gene3D | Classic Zinc Finger | 1 | 117 | - | - | |
| Seca9g01439 | 469 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 414 | 436 | IPR013087 | - | |
| Seca9g01439 | 469 | MobiDBLite | consensus disorder prediction | 394 | 410 | - | - | |
| Seca9g01439 | 469 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 416 | 436 | IPR013087 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca9g01439 | Seca-Chr9 | 24927798 | 24929270 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca9g01439 | 1 | 469 | C2H2 Transcription Factor Family | AT1G26610 | 42.688 | 3.44e-98 | 301 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Seca9g01439 | zf-C2H2_6 | 4.7e-06 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca9g01439 | - | - | gmx:100805520 | 548.125 |