Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01424 ATGGCTGCTGTTACAAATCTCTTCATCCCTGTTAAAGACATAAGTCCTCTTCAAGGCCCATGGTGGACCACTGTTCAGGTTATTAGGATGTGGCATAAAACATTTTGTTCTGAACCCACAAGAATCCTCTATGTTGAGATTGTCTTTATGGATAAACAGGGAACGAAAATCCAAGGCTCCATCAGCCGAGATATCTTGCGGATGAGACGAGTTGAAATGGATGAAGGAAATTACTATGACCTCAAAGGTGTATTTGTTGTTCCAAACGATGGAGAAGACAGACCAACCTCTCATCCATATAGGCTGGTTTTTGACATCTCCTCACAAATTGTGTTGGTGGAACAACGAAGCTTGACTTGCTTTGGCTTATCCCCTCTCACTACTGTCGATATTCAACGGAGGAAAACTCAGACTCAAGACCTTGTAGATAAGGTTGGGATCTTAACATCCATCTCATGTGAAAGGAGATATGTGAGGAAGGACAAACAAGTTAATGCAGTCTTCTTGGAGATAACCGATCCGACTGGTAGGACAGAATGTGTGCTCTATGATGAGTACGTTGAAGATGCACGACAGTTTCTAAAGCGCCATGGTCCATGCACGCCAATTATTGTAGTGCAATTTGCTCGGATTGTTTCTCATGGCCATGTTATCTTTGGAGATGTTGCTATAGAAGCTGTTGTCAGTGTAACCAGGGTGGCATTCAATCCTACAATTCCAGAGGTCTTTGACATGAAAAACTGGCTGGTTATGAATGGTGTGAGGTTGGAGGGTAGGCTTAAGTTTAAGAAGATGGATGAACCACAAAGCTCTATTAGGGATGAGTTCTTACTGTACCACAAAAAGAGACAAATTGGCCAGCTTCTGAGGGGAGGACAGGTTGGGTCGTGTGTTGTTTTTGCTACTATCACATCCTTGCTTGATGATGAGGTATGGTGGTTCTCGGGTTGCAAACACCACAATTGCCCCTTTGAGGCCAGTCTTTTGCAACCATGTGATGGATACTATTGTGTCACTCCAAGGTATAATTTGAAGGTCGAAGTTTCTGATGGTAAGGATATCACTTACTTATTGTTGGGTGATGAGGATGTGTACAAACTCCTACAAGTTCCCTGCGAGGAGCTCCTTACAAAGATACAGGACCCTGATGGTCCCATGTACCCTCCTATATTTGAGCGTCTAATTGGAGAAAGCATGTTGTTCTTAGTGGAATGCAAACAAGTTTCTTACAATTTCAATGAAGATTGTTTTAAAGTTATCAGGGTTTGTGTTGAAAGAGAATTGATCCGAATGTTTTTGCGAGGAGAGATATTTTCTCATGAAGGCAGGACATCATCAACCATTGCACGTTTGGTTGGTGCGCCAGGAGATGAAGCATACTACCATCATGGTGATTGTAGCTCTTATGCCAGTGCAATTCCAGATGAAAACTTCCACACTGCAGACTCTAATGTGGGACAAATGTCTTCATCTAGCAGTGTGTCCTACAAAAACTGTCTCCCACGTCAGACTGGTGTCTTAGATGAAGATCCGGAAATAGATTAG 1545 0.4272 MAAVTNLFIPVKDISPLQGPWWTTVQVIRMWHKTFCSEPTRILYVEIVFMDKQGTKIQGSISRDILRMRRVEMDEGNYYDLKGVFVVPNDGEDRPTSHPYRLVFDISSQIVLVEQRSLTCFGLSPLTTVDIQRRKTQTQDLVDKVGILTSISCERRYVRKDKQVNAVFLEITDPTGRTECVLYDEYVEDARQFLKRHGPCTPIIVVQFARIVSHGHVIFGDVAIEAVVSVTRVAFNPTIPEVFDMKNWLVMNGVRLEGRLKFKKMDEPQSSIRDEFLLYHKKRQIGQLLRGGQVGSCVVFATITSLLDDEVWWFSGCKHHNCPFEASLLQPCDGYYCVTPRYNLKVEVSDGKDITYLLLGDEDVYKLLQVPCEELLTKIQDPDGPMYPPIFERLIGESMLFLVECKQVSYNFNEDCFKVIRVCVERELIRMFLRGEIFSHEGRTSSTIARLVGAPGDEAYYHHGDCSSYASAIPDENFHTADSNVGQMSSSSSVSYKNCLPRQTGVLDEDPEID. 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01424 514 SUPERFAMILY Nucleic acid-binding proteins 8 116 IPR012340 -
Seca9g01424 514 SUPERFAMILY Nucleic acid-binding proteins 293 413 IPR012340 -
Seca9g01424 514 CDD RPA1_DBD_A_like 25 104 - -
Seca9g01424 514 Gene3D - 271 430 IPR012340 -
Seca9g01424 514 Gene3D - 8 115 IPR012340 -
Seca9g01424 514 CDD RPA1_DBD_B_like 143 242 - -
Seca9g01424 514 SUPERFAMILY Nucleic acid-binding proteins 137 254 IPR012340 -
Seca9g01424 514 Gene3D - 122 257 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01424 Seca-Chr9 24746538 24749182 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01424 3 411 Core DNA Replication Machinery Family AT5G08020 20.690 1.74e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01424 - - mtr:11425976 226.483