Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01396 ATGCACGCGCCGGTGTGCTTCGAGAAGTTTGAGGTCCACGAGACTATGAAGGTTGTGCCTGCGGAGGTAATGGACTCGATCCGTAAGAACAAGGTGTGCCTTAAGGGAGGGCTTGTTACCCCTATGGGTGGTGGGGTTAGTTCCCTTAACGTGCAGCTCAGAAAGGAGCTAGATCTCTACGCTTCACTCGTCAATTGCTTCAACCTCCCTGGCTTGCCCACGCGCCACGATAACGTTGACATCGTTGTCATTAGGGAGAACACCGAAGGCGAGTACTCTGGCCTTGAACACGAGGTCGTTCCTGGCGTCGTTGAAAGCCTTAAGCAGAGTCCTGGTTTGCATCTGATACATCTACTAGGTATCTTGAAGATGCTATTGCTGGATGGGGCATTTGGTGCAAGCAACACAACAGATTCTGTTCTTTTGCCTTTTTCCCTAGCTAATCTTATTCAGATTAGTAATATTATTATTGATGCTAAATCTGGTGTGAGTGGAGCAGGGCGTAGTGCCAAAGAAAATTTGTTGTTCACTGAAGTAACTGAGGGTGTTGGTGGTGCAGGGTTGAGAGCTGCTATTGGACTTTCAGAACATGGGTTCAATACTACTTGCATTACCAAGCTCTTCCCAACTTGTTCACACATTGTTGCAGCTCAGCTGATTCAATTTAGCATGCAGACATCTGCTTCTGTGAATGCAGGATTGTTGTTGATGGCAATCATGGCCATCCTTTTTCCTGCTGTTCTATATTACACACGAACTGAGGTTCAGTTTGGTAAATCAGAGTTGGCACTCTCAAGATTCAGCAGCTGCATCATGCTTGTGGCCTATGCGGCATACCTATTTTTTCAATTAAAAAGTGAAAGAAGTCTATATGTCTCTGTGAATGAGATTGTTAGTCTTACGTCGACTTTCCTTTTTTACTTCCTTAGTCATTCTTTTATTTAA 945 0.4487 MHAPVCFEKFEVHETMKVVPAEVMDSIRKNKVCLKGGLVTPMGGGVSSLNVQLRKELDLYASLVNCFNLPGLPTRHDNVDIVVIRENTEGEYSGLEHEVVPGVVESLKQSPGLHLIHLLGILKMLLLDGAFGASNTTDSVLLPFSLANLIQISNIIIDAKSGVSGAGRSAKENLLFTEVTEGVGGAGLRAAIGLSEHGFNTTCITKLFPTCSHIVAAQLIQFSMQTSASVNAGLLLMAIMAILFPAVLYYTRTEVQFGKSELALSRFSSCIMLVAYAAYLFFQLKSERSLYVSVNEIVSLTSTFLFYFLSHSFI. 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01396 314 Gene3D Dihydrodipicolinate Reductase; domain 2 134 224 - -
Seca9g01396 314 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 2 108 - -
Seca9g01396 314 SMART Iso_dh_2 1 242 IPR024084 -
Seca9g01396 314 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 140 183 - -
Seca9g01396 314 Gene3D Isopropylmalate Dehydrogenase 1 116 - -
Seca9g01396 314 Pfam FAD binding domain 182 218 IPR003953 -
Seca9g01396 314 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 7 104 - -
Seca9g01396 314 Pfam Isocitrate/isopropylmalate dehydrogenase 12 101 IPR024084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01396 Seca-Chr9 24521048 24524361 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01396 211 296 Antiporters AT1G55730 63.953 1.67e-26 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01396 K00030 - gmx:100777867 207.608