Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01382 ATGGTGACGAAGTCTACCATCCCTATTGTCATGGTTGGAGTTTTGAGTATTTATGGCCTTATTATTACTGTTATAATCAGTATTGGTATTAATCCCAAGGCCAAATCTTATTACCTATTTGATGGTTATGCCCATGTCCCATATGGTATTGCCCGAAGGCTGGCTAACCTCTCTGTTGGCATGACTATTGGTATTGTTGGTGATGTTGATGTTAGGTTTTGCATGAGATGA 231 0.3939 MVTKSTIPIVMVGVLSIYGLIITVIISIGINPKAKSYYLFDGYAHVPYGIARRLANLSVGMTIGIVGDVDVRFCMR. 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01382 76 PRINTS Vacuolar ATP synthase 16kDa subunit signature 57 76 IPR000245 GO:0033179|GO:0046961|GO:1902600
Seca9g01382 76 PRINTS Vacuolar ATP synthase 16kDa subunit signature 6 30 IPR000245 GO:0033179|GO:0046961|GO:1902600
Seca9g01382 76 NCBIfam V-type ATPase subunit C 1 71 IPR011555 GO:0033179|GO:0046961|GO:1902600
Seca9g01382 76 Gene3D - 1 76 IPR035921 -
Seca9g01382 76 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 1 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01382 Seca-Chr9 24408233 24410072 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01382 1 72 Primary Pumps ATPases(2) AT1G19910 72.222 4.16e-31 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01382 K02155 - csin:114292490 91.6633