Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01362 ATGCTGAGCACGAGGCAATCCTTCTACACCCCTTCCTCTTCTCCTTCTCCTTCTTCTTCCTCCTTGTTTTGTATCATTCTCCTCCAAGCTTCTCTCCTTTTTGGCCTTGCCTTCTCTGCTAACCATGAAGCCTCAACTCTCTTCTCCTGGCTCCATAGTTCTGCATCACCACCCCCTCCATCTTTCTCTAATTGGAACATCCTTGATACCAATCCATGCAACTGGACCTCCATAACATGCTCCTTCCAAGGCTTTGTTACTGAAATCAACATCCAATCTATCCCACTTGAGCTTCCCATACCTTCCAATCTCTCTTCATTTCACTCTCTTAACAAGCTTGTCATTTCTGGTGCCAATCTCACTGGAACCATCCCTGTTGACATTGGTGATTGCTCTGCCCTCACTGTTATTGACCTGAGCTCTAACAATCTTGTTGGTTCTATTCCTGCAAGCATTGGCAAGCTCAAGAATCTGGAGAACTTGTCTTTAAATTCCAACCAGCTTACTGGAAAAATCCCAGATGAGATAGGCAACTGCATTGGCATCAAAAGTTTAGTCCTTTTTGATAATCAGCTAGGTGGGACTATCCCACCTGTGGTGGGAAAGTTGTCAAAACTTGAGGTCCTCAGAGCAGGAGGGAACAAAGATATTGTTGGGAAGATCCCTGAAGAGCTTGGAGAATGCAGCAACTTGACAGTGTTGGGGCTGGCTGATACCAGAATATCTGGTTCTTTGCCTGCTTCTTTGGGTAGGCTTAGCAAGCTTCAGACTTTGTCCATCTATACTACTATGCTATCTGGTGAAATTCCACCAGAGTTAGGTAACTGTTCTGAACTTGTTGACTTGTTCCTATATGAAAATAGCCTTTCAGGGTGTATTCCATCTGAGCTTGGTAAGCTCCAAAATCTGCAACAGTTGTTTTTATGGCAGAATAGTCTTGTGGGAGCTATCCCAGAAGAGATTGGTAACTGTTCAAGCTTGAGAAACATTGATCTCTCTTTGAATTCTCTATCTGGAACTATACCTTTGTCTTTTGGGGGTCTTTTAGAACTTGAAGAGTTTATGATTAGTGATAATAATGTATCTGGTTCAATACCATCCAGTCTTTCAAATTGTAAAAAGCTTCAGCAATTGCAAGTTGACACAAATCAGCTCTCAGGCTTGATTCCACCAGAGCTTGGGCAGTTGTCAAATCTCATAGTGTTCTTTGCTTGGCAGAACCAGCTTGAAGGAAGCATTCCTTCCACTTTAGGAAACTGTAGTAACCTCCAAGCACTAGACTTATCTCGCAATGCACTCACTGGTAGCATTCCTGGTAGCCTATTTCAGCTCCAAAACCTCACAAAACTGCTTCTCATTTCCAATGATATATCAGGTTTTATACCATCAGAAATAGGCAGTTGCAGCTCTCTAATAAGGTTGAGGCTTGGAAACAATAGGATTACTGGCAGCATTCCTAAGACAATAGGCAGTCTCAAGAGCTTGAATTTTTTAGATCTCTCTGGGAACCGCCTCTCCGGGCCAGTGCCTGATGAGATTAGAAGCTGCACAGAACTGCAAATGATAGATTTCAACAGTAACAACTTAGAAGGCCCACTTCCTAATTCCTTGTCATCACTATCTGCACTTCAGGTATTGGATGCATCTTCTAACAAGTTTTCAGGTCCTATACCAGCAAGTTTGGGCCGTCTTGTTTCTCTAAGCAAGTTAATCCTAGGCAATAACTTATTCTCTGGACCAATTCCTGCATCACTTAGCCTATGTTCAAATCTCCAACTGCTTGATCTCAGCAGCAATCAGCTCAGTGGAAGCATATCAGCTGAGCTGGGCCGAATTGAGTCTCTAGAAATTGCTCTTAATCTTAGTTGCAATTCACTCAGTGGGACAATCCCAGCTCAGATATCTGCTCTCAACAAGCTTTCCATACTTGACCTTTCACATAACCAGTTGGAAGGAGATTTGCAACCTCTTGCAGAGCTAGATAACCTTGTATCCCTCAATGTTTCTTACAACAAATTCACTGGCTTTCTTCCAGATAACAAGCTTTTCAGGCAGTTATCATCAAAAGATCTCACTGGAAATCAAGGGCTTTGCACTTCAGGTCAGGAGTCATGCTTTATAAAGGATTCTGGCAAGACTGGTGTGGCATTGAATGGAAATGAAGTAAGGAAGTCGCGAAGGATTAAGCTAGCCATTGGATTGCTGATAGCCTTAACAGTAATAATGATAGTAATGGGGATAACTGCTGTGATCAAAGCAAGAAGAACCATTAAAGATGATGATTCAGAATTAGGGGACTCATGGCCATGGCAATTCATACCATTCCAGAAGCTAAATTTCTCAGTGGAACAAGTACTGAGATGCTTAGTTGATAGAAATATAATTGGGAAGGGATGTTCTGGTGTTGTTTACCGAGCTGAAATGGATAATGGTGAAGTCATTGCTGTGAAGAAATTGTGGCCTACAACAATTGAAGAAGGAGATGCATTTAAGGATGATAAGAGTGGAGTTCGTGACTCATTCTCAGCTGAGGTGAAGACTCTTGGCTCAATCCGTCATAAGAACATTGTCAGATTCTTGGGTTGTTGTTGGAACAGAAAAACAAGATTGCTCATTTTCGATTATATGCCAAATGGAAGTTTAAGCAGTCTACTTCATGAGAGGACTGGAAATTCACTGGAATGGGAACTTAGGTACCGAATCTTGTTAGGTGCTGCAGAAGGCCTTGCATATCTACATCATGACTGTGTTCCTCCTATAGTCCACAGAGATATTAAAGCCAATAACATCCTCATTGGCCTTGAATTTGAACCTTACATTGCTGACTTTGGCTTGGCTAAGCTTGTTGATGATGGTGATTTTGGTCGTTCTTCCAATACAGTTGCTGGTTCCTATGGATATATTGCTCCAGAATATGGCTATATGATGAAGATCACAGAGAAGAGTGATGTTTACAGCTATGGAATAGTTTTGTTAGAAGTCTTGACAGGAAAGCAACCAATTGATCCAACTATACCAGATGGTCTACATGTTGTTGATTGGGTGAGACAGAAAAGGGGTCTTGAAGTACTTGATCCTAGCTTACTGTCTAGACCAGAATCAGAAATAGAGGAAATGATGCAGGCATTGGGCATAGCCTTATTGTGTGTAAATTCATCCCCTGATGAAAGGCCAACAATGAGAGATATAGCTGCAATGCTGAAGGAGATAAAGCATGAAAGGGAGGAATATGCAAAATTTGATGTGCTTCTAAAGGGGTCTCCTGCAAATGATGCATGTGGCAATAAAAGCTCTGGTGGAGTTCCAGCAACATCTTCATCAGTATCTGTCATGCAAACTTTGAACACAAGAAGCAACAACACAAGCTTCTCTGTGTCTTCACTGCTTCATTCATCTTCAAGTTCCAAGCTGGGTTTCAAATGA 3423 0.4189 MLSTRQSFYTPSSSPSPSSSSLFCIILLQASLLFGLAFSANHEASTLFSWLHSSASPPPPSFSNWNILDTNPCNWTSITCSFQGFVTEINIQSIPLELPIPSNLSSFHSLNKLVISGANLTGTIPVDIGDCSALTVIDLSSNNLVGSIPASIGKLKNLENLSLNSNQLTGKIPDEIGNCIGIKSLVLFDNQLGGTIPPVVGKLSKLEVLRAGGNKDIVGKIPEELGECSNLTVLGLADTRISGSLPASLGRLSKLQTLSIYTTMLSGEIPPELGNCSELVDLFLYENSLSGCIPSELGKLQNLQQLFLWQNSLVGAIPEEIGNCSSLRNIDLSLNSLSGTIPLSFGGLLELEEFMISDNNVSGSIPSSLSNCKKLQQLQVDTNQLSGLIPPELGQLSNLIVFFAWQNQLEGSIPSTLGNCSNLQALDLSRNALTGSIPGSLFQLQNLTKLLLISNDISGFIPSEIGSCSSLIRLRLGNNRITGSIPKTIGSLKSLNFLDLSGNRLSGPVPDEIRSCTELQMIDFNSNNLEGPLPNSLSSLSALQVLDASSNKFSGPIPASLGRLVSLSKLILGNNLFSGPIPASLSLCSNLQLLDLSSNQLSGSISAELGRIESLEIALNLSCNSLSGTIPAQISALNKLSILDLSHNQLEGDLQPLAELDNLVSLNVSYNKFTGFLPDNKLFRQLSSKDLTGNQGLCTSGQESCFIKDSGKTGVALNGNEVRKSRRIKLAIGLLIALTVIMIVMGITAVIKARRTIKDDDSELGDSWPWQFIPFQKLNFSVEQVLRCLVDRNIIGKGCSGVVYRAEMDNGEVIAVKKLWPTTIEEGDAFKDDKSGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRKTRLLIFDYMPNGSLSSLLHERTGNSLEWELRYRILLGAAEGLAYLHHDCVPPIVHRDIKANNILIGLEFEPYIADFGLAKLVDDGDFGRSSNTVAGSYGYIAPEYGYMMKITEKSDVYSYGIVLLEVLTGKQPIDPTIPDGLHVVDWVRQKRGLEVLDPSLLSRPESEIEEMMQALGIALLCVNSSPDERPTMRDIAAMLKEIKHEREEYAKFDVLLKGSPANDACGNKSSGGVPATSSSVSVMQTLNTRSNNTSFSVSSLLHSSSSSKLGFK. 1141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01362 1140 Pfam Leucine rich repeat N-terminal domain 40 81 IPR013210 -
Seca9g01362 1140 Gene3D Ribonuclease Inhibitor 154 243 IPR032675 -
Seca9g01362 1140 Gene3D Ribonuclease Inhibitor 340 436 IPR032675 -
Seca9g01362 1140 Gene3D Ribonuclease Inhibitor 42 153 IPR032675 -
Seca9g01362 1140 FunFam LRR receptor-like serine/threonine-protein kinase 538 613 - -
Seca9g01362 1140 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 320 1069 - -
Seca9g01362 1140 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 876 1085 - -
Seca9g01362 1140 SUPERFAMILY Protein kinase-like (PK-like) 767 1068 IPR011009 -
Seca9g01362 1140 Pfam Protein tyrosine and serine/threonine kinase 793 1066 IPR001245 GO:0004672|GO:0006468
Seca9g01362 1140 ProSitePatterns Protein kinases ATP-binding region signature. 795 818 IPR017441 GO:0005524
Seca9g01362 1140 FunFam Putative LRR receptor-like serine/threonine-protein kinase 618 703 - -
Seca9g01362 1140 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 40 199 - -
Seca9g01362 1140 SUPERFAMILY RNI-like 113 458 - -
Seca9g01362 1140 ProSiteProfiles Protein kinase domain profile. 789 1075 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g01362 1140 SUPERFAMILY RNI-like 365 697 - -
Seca9g01362 1140 SMART serkin_6 789 1071 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g01362 1140 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 439 533 - -
Seca9g01362 1140 ProSiteProfiles Leucine-rich repeat profile. 422 444 IPR001611 GO:0005515
Seca9g01362 1140 Gene3D Ribonuclease Inhibitor 437 708 IPR032675 -
Seca9g01362 1140 ProSitePatterns Serine/Threonine protein kinases active-site signature. 920 932 IPR008271 GO:0004672|GO:0006468
Seca9g01362 1140 Gene3D Phosphorylase Kinase; domain 1 775 875 - -
Seca9g01362 1140 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 214 438 - -
Seca9g01362 1140 ProSiteProfiles Leucine-rich repeat profile. 639 661 IPR001611 GO:0005515
Seca9g01362 1140 SMART LRR_typ_2 540 564 IPR003591 -
Seca9g01362 1140 SMART LRR_typ_2 155 179 IPR003591 -
Seca9g01362 1140 SMART LRR_typ_2 660 685 IPR003591 -
Seca9g01362 1140 SMART LRR_typ_2 492 516 IPR003591 -
Seca9g01362 1140 SMART LRR_typ_2 348 372 IPR003591 -
Seca9g01362 1140 SMART LRR_typ_2 420 444 IPR003591 -
Seca9g01362 1140 SMART LRR_typ_2 637 656 IPR003591 -
Seca9g01362 1140 SMART LRR_typ_2 300 324 IPR003591 -
Seca9g01362 1140 Gene3D Ribonuclease Inhibitor 244 339 IPR032675 -
Seca9g01362 1140 Gene3D Transferase(Phosphotransferase) domain 1 876 1085 - -
Seca9g01362 1140 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 772 875 - -
Seca9g01362 1140 Pfam Leucine rich repeat 326 385 IPR001611 GO:0005515
Seca9g01362 1140 Pfam Leucine rich repeat 446 505 IPR001611 GO:0005515
Seca9g01362 1140 Pfam Leucine rich repeat 109 168 IPR001611 GO:0005515
Seca9g01362 1140 PRINTS Leucine-rich repeat signature 591 604 - -
Seca9g01362 1140 PRINTS Leucine-rich repeat signature 637 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01362 Seca-Chr9 24061360 24065459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01362 38 1086 Receptor kinase-like Gene Family AT5G56040 48.966 0.0 992
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca9g01362 PK_Tyr_Ser-Thr 8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01362 - - gmx:100818541 1860.88