Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01359 ATGAACCACCACCACGAAGAGAAAGTCACCATGGACCTTGTTCCACCATCTGAACACCTCTGCTACGTCCGTTGCAACTTCTGTAACACTGTTCTCGCTGTTGGCATCCCATGCAAGAGGCTGCTAGACACTGTGACAGTCAAGTGTGGTCACTGCAGCAACCTCTCCTTTCTCAGCACCAGACCTCCTCCTCATTCTCAGAACCAAAACCAAACCATTGATCACACCCTCACTCTCCAGGTTCTTGTACATGTGTTTGTTTTGTCTTTAATTAGAAAAGCCGGGTTTTACAGTAGTGATGGGAAAAAGGGGCAAGCATCCTCTTCATCCTACTCATCACCAACTACATCCACCGACTCTGTCTCCCCTAAGGCACCACCATTTGTTGTTAAACCACCTGAGAAGAAGCACCGTCTCCCATCTGCTTACAACCGTTTCATGAAAGAGGAGATCCAGCGCATCAAAACAGCCAACCCTCAGATCCCACATCGAGAAGCTTTCAGCGCTGCAGCCAAAAATTGGGCTAGGTTCATTCCAAATTCTCCAACCACTTCAGTTTCTGCAACTAAAAATAATATTGAATGA 585 0.4684 MNHHHEEKVTMDLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPPHSQNQNQTIDHTLTLQVLVHVFVLSLIRKAGFYSSDGKKGQASSSSYSSPTTSTDSVSPKAPPFVVKPPEKKHRLPSAYNRFMKEEIQRIKTANPQIPHREAFSAAAKNWARFIPNSPTTSVSATKNNIE. 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01359 194 FunFam protein CRABS CLAW isoform X3 129 189 - -
Seca9g01359 194 PANTHER PROTEIN YABBY 6-RELATED 16 185 IPR006780 GO:0007275
Seca9g01359 194 MobiDBLite consensus disorder prediction 98 136 - -
Seca9g01359 194 SUPERFAMILY HMG-box 120 175 IPR036910 -
Seca9g01359 194 CDD HMG-box_SF 138 174 - -
Seca9g01359 194 Pfam YABBY protein 16 177 IPR006780 GO:0007275
Seca9g01359 194 Gene3D High mobility group box domain 124 180 IPR036910 -
Seca9g01359 194 MobiDBLite consensus disorder prediction 101 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01359 Seca-Chr9 23964606 23966068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01359 6 193 C2C2-YABBY Transcription Factor Family AT1G69180 59.162 3.50e-63 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Seca9g01359 YABBY 2.8e-57 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01359 K25796 - gmx:100819079 285.804