Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01356 ATGGAATCTTGGAGTTACGTCCCTGAAGAGAAAGGCTATTTGTTTTCTGATGAAATGGATTTTTCACTTGATGCTTTTATGAGAAATAGAAAGGCACTGGTTGAATGGGACAACAAATCCTTCAGTAACTTTGAGAGGGATGGATTTAATTCAGACAGAGAGGTAGTTAAAAGCATGGAATTTGTGGACTTGGGATTTCCTGACTTGTTGCAAAAGTCTTTTCATGGTGGCCAGCCTATGGAGACATCCAGCTGTGAGCTAGACAGTAATTCTAGTAAAAGAGGGAATTCATCCACCCATGTTATTGCTTTAGATTCATCTTTGGGGGAGGAAGAATCTGAGTCAAAGCATCTAAGTTCTCTAATTGAATCCAAAATTCATGACCCTTCACTGATTGATCTGAAGCTAGGGAGGTTAGCAGATTGTAAAGGTGCAAGCAGTGATAAAGATGCAAAAGAAAGATTCACTTTAACATCTATACATCCAACCACGCTTGCAAAGAGAGCTCGCACTTCCAGTTTACCTGCTCAGGCTCCTGTATGTCAAGTTTATGGCTGTAACATGGATCTTAGCTCCTCAAAGGATTATCACAAAAGGCATAAAGTTTGTGATGTTCACTCCAAGACAGCTAAAGTTATTGTTAATGGCATTGAGCAGAGGTTTTGTCAGCAGTGCAGCAGGTTCCATTTGCTAGCTGAATTTGATGATGGTAAGCGCAGTTGTCGCAGGCGTCTAGCCGGACACAATGAACGCCGAAGAAAACCTCAGTTTGATTACATGACTGGTAAACAACACAAGATTCTTCAGTCATATCAAGGTATGAAAAATCCTTTTACCTTCATTAACATAGATAAGACAGAATTGTGGTTCTTCAAATTTTAA 882 0.398 MESWSYVPEEKGYLFSDEMDFSLDAFMRNRKALVEWDNKSFSNFERDGFNSDREVVKSMEFVDLGFPDLLQKSFHGGQPMETSSCELDSNSSKRGNSSTHVIALDSSLGEEESESKHLSSLIESKIHDPSLIDLKLGRLADCKGASSDKDAKERFTLTSIHPTTLAKRARTSSLPAQAPVCQVYGCNMDLSSSKDYHKRHKVCDVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQFDYMTGKQHKILQSYQGMKNPFTFINIDKTELWFFKF. 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01356 293 Gene3D - 172 242 IPR036893 GO:0003677|GO:0005634
Seca9g01356 293 ProSiteProfiles Zinc finger SBP-type profile. 178 255 IPR004333 GO:0003677
Seca9g01356 293 FunFam Squamosa promoter-binding-like protein 14 172 242 - -
Seca9g01356 293 Pfam SBP domain 181 254 IPR004333 GO:0003677
Seca9g01356 293 SUPERFAMILY SBT domain 179 260 IPR036893 GO:0003677|GO:0005634
Seca9g01356 293 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 91 256 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01356 Seca-Chr9 23931101 23933674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01356 1 274 SBP-box Gene Family AT1G69170 40.876 2.06e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca9g01356 SBP 4.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01356 - - gmx:100820149 489.96