Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01352 ATGGGCATCCTCTGTTCTTGTTTAAAAGCGAGGGAACCTGAAGAATCTGCTGCTCTTGGGGGTGAAAACCCTCTCCATCTTCAAATAATTAATGTGCCTAATTTAGAACCGTTTCTTGTATCTTTGGCACATGGTGCAACTGAATCCCCCAATTCCAAGTTACAGCATGCACGTGAATCACAATCATCTGATGATGAGGATGCCTGTCCTACATGTTTTGAAGGGTCTTATTTTTCTGTGACAGAATATACTGATGAAAATCCTAAGATAATTGCAAAGTGTAATCACCATTACCACCTTGGTTGTATATATGAATGGAAGGAGAGAAGTGAAACCTGTCCAACTTGTAGACAGGTATGGAACATATAA 369 0.3984 MGILCSCLKAREPEESAALGGENPLHLQIINVPNLEPFLVSLAHGATESPNSKLQHARESQSSDDEDACPTCFEGSYFSVTEYTDENPKIIAKCNHHYHLGCIYEWKERSETCPTCRQVWNI. 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01352 122 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 40 119 - -
Seca9g01352 122 Pfam Anaphase-promoting complex subunit 11 RING-H2 finger 65 121 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Seca9g01352 122 SUPERFAMILY RING/U-box 53 121 - -
Seca9g01352 122 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 122 IPR013083 -
Seca9g01352 122 ProSiteProfiles Zinc finger RING-type profile. 69 117 IPR001841 -
Seca9g01352 122 SMART ring_2 69 116 IPR001841 -
Seca9g01352 122 MobiDBLite consensus disorder prediction 48 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01352 Seca-Chr9 23837252 23838019 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01352 62 119 C3H Transcription Factor Family AT5G15790 62.069 9.70e-21 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01352 - - aprc:113870372 109.383