Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01349 ATGAGGCCAATTTTGATGAAAGGGCACGAGAGGCCATTGACATTCCTCAAGTACAACAGGGACGGCGATCTCCTTTTCTCTTGCGCCAAGGACCACAACCCCACCGTGTGGTTCGCCGACAACGGCGAACGTTTGGGCACTTATCGAGGCCATAACGGCGCCGTTTGGTGCTGCGATGTCTCAAGAGATTCGGAACTACTCATAACTGGTAGTGCTGATCAAACTGCCAAGCTATGGAACGTGCAAACTGGTCAGCAATTGTTTACCTTCAATTTTGATTCCCCTGCTAGGTCTGTCGACTTCGCCGTCGGTGATAATCTTGCAGTTATCACTACTGACCCCTTTATGGAACTGTCTTCTGCAATTCACGTTAAACGCATTGCTAAAGATCCCACTCAACAGACAGGGGAATCTCTGCTTGTCATTAAGGGCCCTCAGGGAAGAATTAATAGAGCTATTTGGGGACCCCTCAACAAAACCATTATTAGTGCAGGGGAAGATGCTGTTATTCGAATTTGGGATTCTGAGACAGGAAAACTACTTAAAGAGTCAGACAAGGAATCTGGCCACAAAAAGACAATAACATCACTTGCAAAATCTGCTGATGGTTCACATTTTCTTACTGGCTCCCTTGATAAGTCTGCTAGGATTTGGGATACCAGAACATTGACTCTTATCAAGACATATGTGACAGAACGCCCCGTCAATGCAGTAACAATGTCACCTCTTCTTGATCACGTGGTAATTGGAGGTGGTCAGGATGCATCAGCTGTTACAACTACGGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGATAAGATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGGCATTTTGGACCGATTAATGCACTGGCCTTTAACCCTGATGGAAAAAGGTGTATTCTTTGTTCTTCACCTCTTTTTGTGTTGCATTATGATAGATACTGGTTCAGATATTACAAAAAATAA 978 0.4427 MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDVSRDSELLITGSADQTAKLWNVQTGQQLFTFNFDSPARSVDFAVGDNLAVITTDPFMELSSAIHVKRIAKDPTQQTGESLLVIKGPQGRINRAIWGPLNKTIISAGEDAVIRIWDSETGKLLKESDKESGHKKTITSLAKSADGSHFLTGSLDKSARIWDTRTLTLIKTYVTERPVNAVTMSPLLDHVVIGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRCILCSSPLFVLHYDRYWFRYYKK. 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01349 325 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
Seca9g01349 325 Gene3D - 1 320 IPR015943 GO:0005515
Seca9g01349 325 SUPERFAMILY WD40 repeat-like 4 308 IPR036322 GO:0005515
Seca9g01349 325 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 48 85 - -
Seca9g01349 325 Pfam WD domain, G-beta repeat 188 219 IPR001680 GO:0005515
Seca9g01349 325 Pfam WD domain, G-beta repeat 43 80 IPR001680 GO:0005515
Seca9g01349 325 Pfam WD domain, G-beta repeat 283 306 IPR001680 GO:0005515
Seca9g01349 325 ProSiteProfiles Trp-Asp (WD) repeats profile. 6 47 IPR001680 GO:0005515
Seca9g01349 325 ProSitePatterns Trp-Asp (WD) repeats signature. 67 81 IPR019775 -
Seca9g01349 325 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Seca9g01349 325 CDD WD40 7 308 - -
Seca9g01349 325 Hamap Eukaryotic translation initiation factor 3 subunit I [EIF3I]. 1 315 IPR027525 GO:0003743|GO:0005737|GO:0005852
Seca9g01349 325 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 304 - -
Seca9g01349 325 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 222 - -
Seca9g01349 325 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Seca9g01349 325 PRINTS G protein beta WD-40 repeat signature 161 175 IPR020472 -
Seca9g01349 325 PRINTS G protein beta WD-40 repeat signature 67 81 IPR020472 -
Seca9g01349 325 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515
Seca9g01349 325 ProSitePatterns Trp-Asp (WD) repeats signature. 161 175 IPR019775 -
Seca9g01349 325 ProSiteProfiles Trp-Asp (WD) repeats profile. 48 89 IPR001680 GO:0005515
Seca9g01349 325 SMART WD40_4 277 316 IPR001680 GO:0005515
Seca9g01349 325 SMART WD40_4 1 38 IPR001680 GO:0005515
Seca9g01349 325 SMART WD40_4 41 80 IPR001680 GO:0005515
Seca9g01349 325 SMART WD40_4 222 261 IPR001680 GO:0005515
Seca9g01349 325 SMART WD40_4 135 174 IPR001680 GO:0005515
Seca9g01349 325 SMART WD40_4 177 219 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01349 Seca-Chr9 23815654 23818041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01349 1 320 Eukaryotic Initiation Factors Gene Family AT2G46290 75.617 0.0 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01349 K03246 - gmx:100793485 590.882