Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01339 ATGTGTCAATATCTTCAACAACTCCAAAACTCAGAGAAGTCCCCTTCCCTTTCGAGTAAGAAAAGGGTGCGCTGGAATATAGAGGAACACAGGTCATTTCTTATTGGGCTTGAGCAATGTGGTAAAGGAGATTGGATTAGTATTGCAAGACAATTTGTTAAGTCAAAAACTCCAGTGCAAGTTTCTAGTCATGCCCAGAAGTACTTCCTTCGCAATAGTGACATCACAAAAGAAAGGAAAAGAAGAAGCATCCATGACATAAACTCTGTGAAAAATGACTTGATCTCTGATCCCATTCAACCATCACATGAAACGTACCAGCGAAAGCCACTATATGATATGCCTCATGAAATACCTGGATTCATGCTTGTTAATTTCAACAATGGGTTCCAAGACCAAGTACCCCTAATATTGCCAGACAACGGGCGTCTACTAAAGGAGAAACTTCAAACAATAGTTCCGGACATTGACACGCCCTTTTGTGAGTTATGTCTTGTTGCACTTCGAAATTGCCTTGATAATTTGGTTCCAAACCGTGGCTCTCCTTCCCCAAATGAAGCTTCTGAAGGTAATTTGGTTCCAAACCGTGGCTCCCCTTCCCCAAATGAAGCTCCCTCCCTTCAGAATAAGAAATACACGTATTGGACTGATGATGAACATAGGTGA 666 0.4159 MCQYLQQLQNSEKSPSLSSKKRVRWNIEEHRSFLIGLEQCGKGDWISIARQFVKSKTPVQVSSHAQKYFLRNSDITKERKRRSIHDINSVKNDLISDPIQPSHETYQRKPLYDMPHEIPGFMLVNFNNGFQDQVPLILPDNGRLLKEKLQTIVPDIDTPFCELCLVALRNCLDNLVPNRGSPSPNEASEGNLVPNRGSPSPNEAPSLQNKKYTYWTDDEHR. 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01339 221 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 10 107 IPR043363 -
Seca9g01339 221 SUPERFAMILY Homeodomain-like 18 73 IPR009057 -
Seca9g01339 221 MobiDBLite consensus disorder prediction 176 212 - -
Seca9g01339 221 Gene3D - 23 75 - -
Seca9g01339 221 CDD SANT 24 69 IPR001005 -
Seca9g01339 221 SMART sant 21 71 IPR001005 -
Seca9g01339 221 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Seca9g01339 221 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Seca9g01339 221 MobiDBLite consensus disorder prediction 176 221 - -
Seca9g01339 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 73 IPR017930 -
Seca9g01339 221 NCBIfam myb-like DNA-binding domain, SHAQKYF class 20 71 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01339 Seca-Chr9 23557022 23559486 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca9g01339 Myb_DNA-binding 3.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01339 - - atr:18437565 110.923