Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01336 ATGAAAGCAGGGAAGGGGAACCAGGAAGAGGATGAGTACGAGGAGGAAGACTTCGGTTCTTCCAAGAAACAAGGCCCTTCCTCTGCCCCTAACACTAATAAAGTTAAAGCAGATGCAAAAGCTATTGATAAGGCTAGTGCAATAAGATCGAAACATTCTGTGACTGAGCAGCGAAGAAGGAGCAAGATAAATGAGAGATTCCAGATATTGAGGGATCTCATACCTCATAGTGATCAAAAGAGGGACACGGCATCATTCTTATTAGAGGTTATTGAGTATGTCCAGTACTTACAGGAGAAAGTACAAAAATATGAAGGCTCATATCAAGGTTGGAGTCAAGAGCCTTCGAAGTTGATGCCATGGAGAAATAGTCATTGGCGTGTCCAAAGCTTTGTTGGTCAACCTGCAGCTGTAAAGAATGGCTCAGGTCCGGTATCACCTTTTCCTGGAAAGTTTGATGAAAGCAATGTTAGTATCAGTCCAACTATGCTTAGTGACACCCAGAGTATGATAGATCCTGATAATCAGAGCAGAGATATTGTCAGCAAGACAGCAGAGAGACAACCTGATTTATCAAGCAAGGGAATACCTCTGCCCTTGGCTATGCATGCAAACATGTCTGTTCCTGTCAGAAGTGATGGTGTTCTTGCCCATCCTCTTCAGGGAACTGTTTCTGATGCACAATCAACTGAATGCCCAGCAACTAGTGAACCACAGAACCTGCAGGATGAACTGACAGTTGAAGGAGGGACAATTAGCATATCAAGTGTATACTCCCAAGGGTTGTTGAACAATTTAACTCAAGCGCTACAGAGTGCTGGTTTAGATCTGTCACAGGCTAGCATCTCAGTTCAGATTAATCTTGGGAAACGAGCAAACAAAGGACCAAGTGGTGGTACCTCTTCTCCTAAGAATCATGATAACCCCCTTTCTAGCCATCAAGCAATTGCACATTTTAGAGATGCAGGCAGTGGGGAAGACTCAGATCAAGCTCAAAAACGAATGAGAACATACAAATGA 1020 0.4343 MKAGKGNQEEDEYEEEDFGSSKKQGPSSAPNTNKVKADAKAIDKASAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQGWSQEPSKLMPWRNSHWRVQSFVGQPAAVKNGSGPVSPFPGKFDESNVSISPTMLSDTQSMIDPDNQSRDIVSKTAERQPDLSSKGIPLPLAMHANMSVPVRSDGVLAHPLQGTVSDAQSTECPATSEPQNLQDELTVEGGTISISSVYSQGLLNNLTQALQSAGLDLSQASISVQINLGKRANKGPSGGTSSPKNHDNPLSSHQAIAHFRDAGSGEDSDQAQKRMRTYK. 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01336 339 FunFam BHLH domain class transcription factor 45 117 - -
Seca9g01336 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 45 119 IPR036638 GO:0046983
Seca9g01336 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 97 IPR011598 GO:0046983
Seca9g01336 339 MobiDBLite consensus disorder prediction 37 60 - -
Seca9g01336 339 MobiDBLite consensus disorder prediction 320 339 - -
Seca9g01336 339 Gene3D - 45 118 IPR036638 GO:0046983
Seca9g01336 339 CDD bHLH_AtBIM_like 46 122 - -
Seca9g01336 339 MobiDBLite consensus disorder prediction 290 339 - -
Seca9g01336 339 MobiDBLite consensus disorder prediction 290 312 - -
Seca9g01336 339 SMART finulus 53 103 IPR011598 GO:0046983
Seca9g01336 339 Pfam Helix-loop-helix DNA-binding domain 49 98 IPR011598 GO:0046983
Seca9g01336 339 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 5 337 IPR044295 GO:0003700|GO:0006351|GO:0046983
Seca9g01336 339 MobiDBLite consensus disorder prediction 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01336 Seca-Chr9 23485724 23491146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01336 1 337 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 56.677 4.55e-119 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca9g01336 HLH 1.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01336 - - gmx:100816055 584.719