Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01310 ATGACCTCAAAAACCAGAAGTTCTACCATTCGGGTAGCTCTCGTAGTTGCTTTTCTTACAGCCAATGTTGTTTTATCTGATGACAATATACCAATTCCTGATGGAAAGTCCCAATTGGATGCCTGGTTTAATAAAAATGTAGCGCCTTTTGCTCAAAGAAAGAGCAGCTTAGACCCTGCATTGGTGACTGCAGAGAATGGTGTTAAGGTTGTGAAGGTCATGCAAGATGGAAGTGGGGATTTCAAAACCATCACTGATGCCATTAACAGCATACCTAACGGGAACACCAAGCGTGTGATTTTATACATTGGGGGTGCAAATTATCAAGAGAAAATCAAAATTGAAAAGACAAAACCTTTTATCACCTTATATGGGGAACCAAAAAACATGCCAAACTTGACATATGGGGGCACTGCACAACAATATGGCACTGTTGATAGTGCTACATTGATTGTTGAATCAGATTACTTCGTGGCTGCTAACATCATCATCTCGAATTCTGCACAAAGACCTGATGGAAAAAGGGTAGGAGCTCAAGCGGTTGCATTGAGAGTTTCTGGTGACAAAGCAGCATTTTATAATTGCAAGCTCTTTGGATTCCAGGACACAGTGTGTGATGATAGGAATAGGCATTTTTTCAAAAACTGCGTAATTCAAGGCACTGTGGATTTCATTTTCGGAAGTGGGAAGTCACTATATTTGGACACTGAATTGAAAGTATTTGGCGATAGTGGGATGACTGTGATAGTGGCACAAGCAAGAAAAAGTGATGAAGAGGATAATGTCTACTCATTTGTGCATTGTGATATTACTGGAACTGGATCTGGCACTTTCTTGGGCAGAGCATGGTTTTCTCATTCCAAAGTGGTCTATGCTTACACCACCATGAGCAATGTTGTGAATCCAGAAGGGTGGAGTAACAACATGCACTCTGAATATGACAGAACAACATTTTTTGGAGAATACAAGAACAAGGGACCTGGTGCAGATCCCAAAAAACGTGCCCCTTTCACAAAGCAATTAAGTGATGCAGAGGTCAAACCTTTCATAACTCTTGGAATGCTTGAAGGCTCCAAATGGCTACTTCCTCCTCCATCCCCTAAAGTCTAA 1110 0.4117 MTSKTRSSTIRVALVVAFLTANVVLSDDNIPIPDGKSQLDAWFNKNVAPFAQRKSSLDPALVTAENGVKVVKVMQDGSGDFKTITDAINSIPNGNTKRVILYIGGANYQEKIKIEKTKPFITLYGEPKNMPNLTYGGTAQQYGTVDSATLIVESDYFVAANIIISNSAQRPDGKRVGAQAVALRVSGDKAAFYNCKLFGFQDTVCDDRNRHFFKNCVIQGTVDFIFGSGKSLYLDTELKVFGDSGMTVIVAQARKSDEEDNVYSFVHCDITGTGSGTFLGRAWFSHSKVVYAYTTMSNVVNPEGWSNNMHSEYDRTTFFGEYKNKGPGADPKKRAPFTKQLSDAEVKPFITLGMLEGSKWLLPPPSPKV. 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01310 369 Gene3D - 66 364 IPR012334 -
Seca9g01310 369 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 64 361 - -
Seca9g01310 369 FunFam Pectinesterase 66 363 - -
Seca9g01310 369 SUPERFAMILY Pectin lyase-like 70 362 IPR011050 -
Seca9g01310 369 ProSitePatterns Pectinesterase signature 2. 218 227 IPR033131 -
Seca9g01310 369 Pfam Pectinesterase 71 351 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01310 Seca-Chr9 22947332 22949645 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01310 9 366 Carbohydrate Esterase AT1G69940 57.542 6.08e-155 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01310 K01051 - gmx:100786427 593.193