Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01298 ATGAGTGACAAGGAAAAGTTTGAGCTTGATAGAAACGAGGATCCTATGAGTTATTCTACTGGTATGCCCTCGGATTGGAGATTTGGGGGTGCCAATCTTGCAAATTCATCTGTGGGATTGGTTGCCATGGGAAGTTCTATGAATGTCAACAGAGGGGATCTAATTGGTTCTTCTTCATGTTCCTCTGCCTCAATGGTGGATTCATTTGGTCCAAACTTCTGGGACCATCCAACCAATTCCCAAAACTTGGGATTTTGTGACATTAATGTCCACAACAATGGGAGCTCTTCAAACACAACTGGAATCAGAAAAGATGGCTTTGGCTTTGGAAGAGCTGGTCAGGATCATGGATCACTTGAAATGGGTTGGAACCCTTCTAATTCTATGTTGAAAGGGGATGGTTTTTTACCAAATGGACCAGGGATATTTCCCCAGAATTTATCTCAGTTCCCAACTGATTCTGGATTTATTGAGAGGGCTGCAAGATTCTCATGCTTCAGTGGAGGGAATTTTGGTGATATGGTGAACTCATATGAGATTCCTCAATCCATGGGGATGTATGCTGGGACAATGCATGGAACAAGAGATGCTTTTGCAGGCCATGGATTAAAATCAGCAACTGGAGGACAATCTCAAGAAAGTGATCTGAATGTAGTTGAAGCTGCAAAATCTGTGTCTCCATCTGTTGAGCATCTGGCTACTAAAGGAAGCCCTCTCAAGAATGATAAAAGAAGTGAAAACCGTGTTATATCTCAAGATGAAGGGAAGCAAGCTCTTGTTAGGCCTGCTAATGATTCTGATAGAGCTGAATCTAGTGATGATGGTGGTGGTGGTGGCCAGGATGATTCCCCAATGTTGGAGGGTACTAGTGGGGAGCCTTCTATTAAAGGACTAAACTCAAAGAAAAGGAAAAGAAGTGGACAGGATGCTGATAATGATAAAGCCAATGGAGCTCCAGAACTACACAGTGAAGGTGCAAAGGACAACTCTGAGAGTCAACAGAAGGTAGACCAACAACCAACTTCAACAGCCAAGGCTTCCGGGAAGAATGCCAAACAAGGGTCTCAAGCTTCTGATCAACCTAAGGAGGAATACATACATGTTAGGGCTCGCCGGGGTCAAGCAACAAATAGTCACAGCCTTGCAGAGAGAGTTAGGAGGGAAAAGATAAGTGAGAGGATGAAGTTTCTTCAAGACCTTGTACCTGGATGCAGCAAGGTCACTGGCAAAGCAGTGATGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAGTTTTTATCTATGAAACTTGCAACAGTAAATCCACGGCTGGATTTTAATATTGAAGGACTTCTTGCTAAAGATATTCTTCACCAACGGCCTGGTCCTTCATCTGCACTAGGGTTTCCTCTAGAAATGTCTATGGCTTTTCCTCCATTACATCCTTCTCAACCAGGTCTGATTCAGCCAATTATTCCTAACATGGCAAACTCCTCCGATATCCTTCGAAGAACTGTTCATCCACAGTTAGCACCCTTGAGTGGAGGATTCAAGGAGCCAAATCAGCTGCCTGATGTGTGGGAGGATGAGCTTCACAATGTTGTACAGATGAGCTTTGCAACAACTGCTCCCCTTAGTAGCCAAGATGTGGATGGTACTGTGCCAGCAAGTCAGATGAAAGTTGAACTTTGA 1686 0.4377 MSDKEKFELDRNEDPMSYSTGMPSDWRFGGANLANSSVGLVAMGSSMNVNRGDLIGSSSCSSASMVDSFGPNFWDHPTNSQNLGFCDINVHNNGSSSNTTGIRKDGFGFGRAGQDHGSLEMGWNPSNSMLKGDGFLPNGPGIFPQNLSQFPTDSGFIERAARFSCFSGGNFGDMVNSYEIPQSMGMYAGTMHGTRDAFAGHGLKSATGGQSQESDLNVVEAAKSVSPSVEHLATKGSPLKNDKRSENRVISQDEGKQALVRPANDSDRAESSDDGGGGGQDDSPMLEGTSGEPSIKGLNSKKRKRSGQDADNDKANGAPELHSEGAKDNSESQQKVDQQPTSTAKASGKNAKQGSQASDQPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEGLLAKDILHQRPGPSSALGFPLEMSMAFPPLHPSQPGLIQPIIPNMANSSDILRRTVHPQLAPLSGGFKEPNQLPDVWEDELHNVVQMSFATTAPLSSQDVDGTVPASQMKVEL. 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01298 561 MobiDBLite consensus disorder prediction 236 251 - -
Seca9g01298 561 MobiDBLite consensus disorder prediction 260 275 - -
Seca9g01298 561 MobiDBLite consensus disorder prediction 1 22 - -
Seca9g01298 561 SMART finulus 380 430 IPR011598 GO:0046983
Seca9g01298 561 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 374 424 IPR011598 GO:0046983
Seca9g01298 561 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 372 443 IPR036638 GO:0046983
Seca9g01298 561 MobiDBLite consensus disorder prediction 297 331 - -
Seca9g01298 561 CDD bHLH_AtBPE_like 364 449 - -
Seca9g01298 561 Gene3D - 371 444 IPR036638 GO:0046983
Seca9g01298 561 MobiDBLite consensus disorder prediction 222 362 - -
Seca9g01298 561 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 257 476 IPR024097 GO:0006355
Seca9g01298 561 MobiDBLite consensus disorder prediction 332 360 - -
Seca9g01298 561 FunFam Basic helix-loop-helix transcription factor 371 443 - -
Seca9g01298 561 Pfam Helix-loop-helix DNA-binding domain 377 425 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01298 Seca-Chr9 22841202 22845720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01298 56 537 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 46.531 2.61e-118 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca9g01298 HLH 7.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01298 - - gmx:100797720 920.998